3I4D
Photosynthetic reaction center from rhodobacter sphaeroides 2.4.1
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth H] | SCOP2B Superfamily | PRC-barrel domain | 8041120 | 3000637 | SCOP2B (2022-06-29) |
C [auth H] | SCOP2B Superfamily | Photosystem II reaction centre subunit H, transmembrane region | 8041121 | 3000750 | SCOP2B (2022-06-29) |
A [auth L] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8034635 | 3000736 | SCOP2B (2022-06-29) |
B [auth M] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8034636 | 3000736 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth H] | PF03967,PF05239 | e3i4dH1 | A: beta barrels | X: SH3 | H: PRC-barrel domain (From Topology) | T: PRC-barrel domain | F: PF03967,PF05239 | ECOD (1.6) |
C [auth H] | PF03967 | e3i4dH2 | A: extended segments | X: Photosystem II reaction centre subunit H, transmembrane region (From Topology) | H: Photosystem II reaction centre subunit H, transmembrane region (From Topology) | T: Photosystem II reaction centre subunit H, transmembrane region | F: PF03967 | ECOD (1.6) |
A [auth L] | PF00124 | e3i4dL1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00124 | ECOD (1.6) |
B [auth M] | PF00124 | e3i4dM1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00124 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth H] | 4.10.540.10 | Few Secondary Structures | Irregular | Photosynthetic Reaction Center | Chain H, domain 1 | CATH (4.3.0) |
C [auth H] | 3.90.50.10 | Alpha Beta | Alpha-Beta Complex | Photosynthetic Reaction Center | Chain H, domain 2 | CATH (4.3.0) |
A [auth L] | 1.20.85.10 | Mainly Alpha | Up-down Bundle | Photosynthetic Reaction Center, subunit M | domain 1 | CATH (4.3.0) |
B [auth M] | 1.20.85.10 | Mainly Alpha | Up-down Bundle | Photosynthetic Reaction Center, subunit M | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth H] | PF05239 | PRC-barrel domain (PRC) | PRC-barrel domain | The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ... | Domain |
A [auth L] | PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family |
B [auth M] | PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth H] | IPR014747 | Bacterial photosynthetic reaction centre, H-chain, C-terminal | Homologous Superfamily |
C [auth H] | IPR015810 | Photosynthetic reaction centre, H subunit, N-terminal | Domain |
C [auth H] | IPR005652 | Photosynthetic reaction centre, H subunit | Family |
C [auth H] | IPR037097 | Photosynthetic reaction centre, H subunit, N-terminal domain superfamily | Homologous Superfamily |
C [auth H] | IPR011033 | PRC-barrel-like superfamily | Homologous Superfamily |
C [auth H] | IPR027275 | PRC-barrel domain | Domain |
A [auth L] | IPR036854 | Photosystem II protein D1/D2 superfamily | Homologous Superfamily |
A [auth L] | IPR000484 | Photosynthetic reaction centre, L/M | Family |
A [auth L] | IPR005871 | Photosynthetic reaction centre, L subunit | Family |
B [auth M] | IPR036854 | Photosystem II protein D1/D2 superfamily | Homologous Superfamily |
B [auth M] | IPR005781 | Photosynthetic reaction centre, M subunit | Family |
B [auth M] | IPR000484 | Photosynthetic reaction centre, L/M | Family |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |