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 3HVY | pdb_00003hvy

Crystal structure of putative cystathionine beta-lyase involved in aluminum resistance (NP_348457.1) from Clostridium acetobutylicum at 2.00 A resolution

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DTrmKe3hvyD1 A: alpha arraysX: Ribosomal protein L19 (L19e) C-terminal domainH: Ribosomal protein L19 (L19e) C-terminal domainT: Ribosomal protein L19 (L19e) C-terminal domainF: TrmKECOD (v295.2)
CTrmKe3hvyC1 A: alpha arraysX: Ribosomal protein L19 (L19e) C-terminal domainH: Ribosomal protein L19 (L19e) C-terminal domainT: Ribosomal protein L19 (L19e) C-terminal domainF: TrmKECOD (v295.2)
BTrmKe3hvyB1 A: alpha arraysX: Ribosomal protein L19 (L19e) C-terminal domainH: Ribosomal protein L19 (L19e) C-terminal domainT: Ribosomal protein L19 (L19e) C-terminal domainF: TrmKECOD (v295.2)
AMet_gamma_lyasee3hvyA1 A: alpha arraysX: OB-foldH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: Met_gamma_lyaseECOD (v295.2)
AMet_gamma_lyasee3hvyA2 A: alpha arraysX: OB-foldH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: Met_gamma_lyaseECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.90.1150.60 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Methioning gamme-lyase, C-terminal domainCATH (4.3.0)
D3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
C3.90.1150.60 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Methioning gamme-lyase, C-terminal domainCATH (4.3.0)
C3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
B3.90.1150.60 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Methioning gamme-lyase, C-terminal domainCATH (4.3.0)
B3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
A3.90.1150.60 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Methioning gamme-lyase, C-terminal domainCATH (4.3.0)
A3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF06838Methionine gamma-lyase (Met_gamma_lyase)Methionine gamma-lyaseThis is a putative pyridoxal 5'-phosphate-dependent methionine gamma-lyase enzyme involved in methionine catabolism. Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR015424Pyridoxal phosphate-dependent transferaseHomologous Superfamily
A, B, C, D
IPR015421Pyridoxal phosphate-dependent transferase, major domainHomologous Superfamily
A, B, C, D
IPR009651Putative methionine gamma-lyaseFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B, C, D
LLP Parent Component: LYS

:  AA0119

:  N6-pyridoxal phosphate-L-lysine MOD:00128
A, B, C, D
MSE Parent Component: MET

:  AA0119