3H6E

The crystal structure of a carbohydrate kinase from Novosphingobium aromaticivorans

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	FGGY_N	e3h6eA1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: FGGY_N	ECOD (1.6)
A	FGGY_NaCK_like	e3h6eA2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: FGGY_NaCK_like	ECOD (1.6)
B	FGGY_N	e3h6eB1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: FGGY_N	ECOD (1.6)
B	FGGY_NaCK_like	e3h6eB2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: FGGY_NaCK_like	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
B	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00370	FGGY family of carbohydrate kinases, N-terminal domain (FGGY_N)	FGGY family of carbohydrate kinases, N-terminal domain	This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain.	Domain
A, B	PF21546	Carbohydrate kinase FGGY, C-terminal domain (FGGY_C_2)	Carbohydrate kinase FGGY, C-terminal domain	This domain is found at the C-terminal end of Carbohydrate kinase, FGGY from Novosphingobium aromaticivorans and similar bacterial proteins. This protein may catalyse the transfer of a phosphate group from ATP to their carbohydrate substrates. It con ...	This domain is found at the C-terminal end of Carbohydrate kinase, FGGY from Novosphingobium aromaticivorans and similar bacterial proteins. This protein may catalyse the transfer of a phosphate group from ATP to their carbohydrate substrates. It contain two large domains, which are separated by a deep cleft. This domain, thought to be responsible for ATP binding, shows an alpha-beta configuration.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Carbohydrate kinase, FGGY	kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	phosphorylation phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process carbohydrate metabolic process primary metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
A, B	IPR018484	Carbohydrate kinase FGGY, N-terminal	Domain
A, B	IPR049382	Carbohydrate kinase FGGY, C-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.