3GPP
MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-T224P complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3gppa2 | All alpha proteins | S13-like H2TH domain | S13-like H2TH domain | Middle domain of MutM-like DNA repair proteins | DNA repair protein MutM (Fpg) | Geobacillus stearothermophilus (Geobacillus stearothermophilus ) [TaxId: 1422 ], | SCOPe (2.08) |
A | d3gppa1 | All beta proteins | N-terminal domain of MutM-like DNA repair proteins | N-terminal domain of MutM-like DNA repair proteins | N-terminal domain of MutM-like DNA repair proteins | DNA repair protein MutM (Fpg) | Geobacillus stearothermophilus (Geobacillus stearothermophilus ) [TaxId: 1422 ], | SCOPe (2.08) |
A | d3gppa3 | Small proteins | Glucocorticoid receptor-like (DNA-binding domain) | Glucocorticoid receptor-like (DNA-binding domain) | C-terminal, Zn-finger domain of MutM-like DNA repair proteins | DNA repair protein MutM (Fpg) | Geobacillus stearothermophilus (Geobacillus stearothermophilus ) [TaxId: 1422 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8056365 | 3000068 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | FPG N-terminal domain-like | 8056363 | 3000074 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | S13-like H2TH domain | 8056364 | 3000053 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Fapy_DNA_glyco | e3gppA3 | A: beta barrels | X: MutM N-terminal domain-like | H: N-terminal domain of MutM-like DNA repair proteins (From Topology) | T: N-terminal domain of MutM-like DNA repair proteins | F: Fapy_DNA_glyco | ECOD (1.6) |
A | H2TH | e3gppA1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: H2TH | ECOD (1.6) |
A | zf-FPG_IleRS | e3gppA2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: C-terminal, Zn-finger domain of MutM-like DNA repair proteins (From Topology) | T: C-terminal, Zn-finger domain of MutM-like DNA repair proteins | F: zf-FPG_IleRS | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.190.10 | Alpha Beta | Alpha-Beta Barrel | N-terminal domain of MutM-like DNA repair proteins | MutM-like, N-terminal | CATH (4.3.0) |
A | 1.10.8.50 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06827 | Zinc finger found in FPG and IleRS (zf-FPG_IleRS) | Zinc finger found in FPG and IleRS | This zinc binding domain is found at the C-terminus of isoleucyl tRNA synthetase and the enzyme Formamidopyrimidine-DNA glycosylase EC:3.2.2.23. | Domain | |
PF06831 | Formamidopyrimidine-DNA glycosylase H2TH domain (H2TH) | Formamidopyrimidine-DNA glycosylase H2TH domain | Formamidopyrimidine-DNA glycosylase (Fpg) is a DNA repair enzyme that excises oxidised purines from damaged DNA. This family is the central domain containing the DNA-binding helix-two turn-helix domain [1]. | Domain | |
PF01149 | Formamidopyrimidine-DNA glycosylase N-terminal domain (Fapy_DNA_glyco) | Formamidopyrimidine-DNA glycosylase N-terminal domain | Formamidopyrimidine-DNA glycosylase (Fpg) is a DNA repair enzyme that excises oxidised purines from damaged DNA. This family is the N-terminal domain contains eight beta-strands, forming a beta-sandwich with two alpha-helices parallel to its edges [1 ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000214 | Zinc finger, DNA glycosylase/AP lyase-type | Domain | |
IPR035937 | MutM-like, N-terminal | Homologous Superfamily | |
IPR015887 | DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site | Binding Site | |
IPR012319 | Formamidopyrimidine-DNA glycosylase, catalytic domain | Domain | |
IPR020629 | Formamidopyrimidine-DNA glycosylase | Family | |
IPR015886 | DNA glycosylase/AP lyase, H2TH DNA-binding | Domain | |
IPR010663 | Zinc finger, FPG/IleRS-type | Domain | |
IPR010979 | Small ribosomal subunit protein uS13-like, H2TH | Homologous Superfamily |