3GLV | pdb_00003glv

Crystal structure of the lipopolysaccharide core biosynthesis protein from Thermoplasma volcanium GSS1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Nucleotidylyl transferase	8079397	3001541	SCOP2B (2022-06-29)
A	SCOP2 Family	Cytidylyltransferase	8079396	4003833	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nucleotidylyl transferase	8079397	3001541	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e3glvB1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Ras	F:	ECOD (20:10:01)
A		e3glvA1	A: Alpha-beta plaits	X: Nucleotide-diphospho-sugar transferases	H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	T: MC1	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)
A	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Lipopolysaccharide core biosynthesis protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding adenylyltransferase activity FMN adenylyltransferase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	nucleoside phosphate metabolic process ribose phosphate metabolic process flavin-containing compound metabolic process carbohydrate derivative metabolic process primary metabolic process nucleotide metabolic process nucleobase-containing compound metabolic process ribonucleotide metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process metabolic process cellular process small molecule metabolic process nucleoside phosphate metabolic process ribose phosphate metabolic process flavin-containing compound metabolic process carbohydrate derivative metabolic process primary metabolic process nucleotide metabolic process nucleobase-containing compound metabolic process ribonucleotide metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process metabolic process cellular process small molecule metabolic process FMN metabolic process nucleoside monophosphate metabolic process phosphorus metabolic process FAD biosynthetic process FAD metabolic process nucleotide biosynthetic process flavin adenine dinucleotide biosynthetic process flavin adenine dinucleotide metabolic process nucleobase-containing compound biosynthetic process flavin-containing compound biosynthetic process biosynthetic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR004821	Cytidyltransferase-like domain	Domain
A, B	IPR024902	FAD synthase RibL	Family
A, B	IPR050385	Archaeal FAD synthase	Family
A, B	IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.