3G8D
Crystal structure of the biotin carboxylase subunit, E296A mutant, of acetyl-COA carboxylase from Escherichia coli
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3g8da2 | All beta proteins | Barrel-sandwich hybrid | Rudiment single hybrid motif | automated matches | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
A | d3g8da1 | Alpha and beta proteins (a/b) | PreATP-grasp domain | PreATP-grasp domain | automated matches | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
B | d3g8db3 | All beta proteins | Barrel-sandwich hybrid | Rudiment single hybrid motif | automated matches | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
B | d3g8db1 | Alpha and beta proteins (a/b) | PreATP-grasp domain | PreATP-grasp domain | automated matches | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
B | d3g8db2 | Alpha and beta proteins (a+b) | ATP-grasp | Glutathione synthetase ATP-binding domain-like | BC ATP-binding domain-like | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | PreATP-grasp domain | 8034649 | 3001680 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Rudiment single hybrid motif | 8034648 | 3001910 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Rudiment single hybrid motif | 8034648 | 3001910 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8034650 | 3000094 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | PreATP-grasp domain | 8034649 | 3001680 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02786 | e3g8dA6 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: PF02786 | ECOD (1.6) |
A | PF02785 | e3g8dA2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: CO dehydrogenase molybdoprotein N-domain-like | F: PF02785 | ECOD (1.6) |
A | PF00289 | e3g8dA5 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: PreATP-grasp domain | F: PF00289 | ECOD (1.6) |
B | PF02786 | e3g8dB1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: PF02786 | ECOD (1.6) |
B | PF02785 | e3g8dB2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: CO dehydrogenase molybdoprotein N-domain-like | F: PF02785 | ECOD (1.6) |
B | PF00289 | e3g8dB3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: PreATP-grasp domain | F: PF00289 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.20 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
A | 3.30.470.20 | Alpha Beta | 2-Layer Sandwich | D-amino Acid Aminotransferase | Chain A, domain 1 | CATH (4.3.0) |
B | 3.40.50.20 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
B | 3.30.470.20 | Alpha Beta | 2-Layer Sandwich | D-amino Acid Aminotransferase | Chain A, domain 1 | CATH (4.3.0) |
B | 3.30.1490.20 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02786 | Carbamoyl-phosphate synthase L chain, ATP binding domain (CPSase_L_D2) | Carbamoyl-phosphate synthase L chain, ATP binding domain | Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines [2]. The c ... | Domain | |
PF02785 | Biotin carboxylase C-terminal domain (Biotin_carb_C) | Biotin carboxylase C-terminal domain | Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference [1] are i ... | Domain | |
PF00289 | Biotin carboxylase, N-terminal domain (Biotin_carb_N) | Biotin carboxylase, N-terminal domain | This domain is structurally related to the PreATP-grasp domain. The family contains the N-terminus of biotin carboxylase enzymes [1,3], and propionyl-CoA carboxylase A chain [2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005481 | Biotin carboxylase-like, N-terminal domain | Domain | |
IPR011761 | ATP-grasp fold | Domain | |
IPR011764 | Biotin carboxylation domain | Domain | |
IPR051602 | Acetyl-CoA Carboxylase Biotin Carboxylase Component | Family | |
IPR013815 | ATP-grasp fold, subdomain 1 | Homologous Superfamily | |
IPR004549 | Acetyl-CoA carboxylase, biotin carboxylase | Family | |
IPR005482 | Biotin carboxylase, C-terminal | Domain | |
IPR005479 | Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain | Domain | |
IPR016185 | Pre-ATP-grasp domain superfamily | Homologous Superfamily | |
IPR011054 | Rudiment single hybrid motif | Homologous Superfamily |