3FRI
Structure of the 16S rRNA methylase RmtB, I222
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Antibiotic resistance ribosomal RNA methyltransferase, C-terminal domain-like | 8049059 | 4006324 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Antibiotic resistance ribosomal RNA methyltransferase, N-terminal domain-like | 8090792 | 4007714 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8090785 | 3000118 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | UBA-like | 8090793 | 3001235 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | FmrO_N | e3friA1 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: FmrO_N | ECOD (1.6) |
A | FmrO_C | e3friA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: FmrO_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.8.10 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
A | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
AMR Gene: CARD Annotation CARD Database Homepage
Chains | Accession | Short Name | Description | Provenance Source (Version) |
---|---|---|---|---|
ARO:3000860 | rmtB | RmtB is a 16S rRNA methyltransferase that targets mature or nearly mature 30S subunits. It transfers a methyl group from S-adenosyl-L-methionine to N7-G1405 of the 16S rRNA, an aminoglycoside binding site. | CARD (3.3.0) |
AMR Gene Family: CARD Annotation CARD Database Homepage
Chains | Accession | Gene Family | Drug Class | Resistance Machanism | Provenance Source (Version) |
---|---|---|---|---|---|
ARO:3004271 | 16S rRNA methyltransferase (G1405) | aminoglycoside antibiotic | antibiotic target alteration | CARD (3.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07091 | Ribosomal RNA methyltransferase (FmrO) (FmrO) | Ribosomal RNA methyltransferase (FmrO) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
16S rRNA methylase |
| - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR025981 | Ribosomal RNA aminoglycoside-resistance methyltransferase | Family | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR010769 | Ribosomal RNA aminoglycoside-resistance methyltransferase, Gram-negative bacteria | Family |