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Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A. External Resource: Annotation Chains Domain Info Class Fold Superfamily Family Domain Species Provenance Source (Version) H d3fifh1 All beta proteins Sm-like fold Sm-like ribonucleoproteins YgdI/YgdR-like automated matches Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08) H d3fifh2 Artifacts Tags Tags Tags C-terminal Tags Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08) G d3fifg1 All beta proteins Sm-like fold Sm-like ribonucleoproteins YgdI/YgdR-like automated matches Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08) G d3fifg2 Artifacts Tags Tags Tags C-terminal Tags Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08) F d3fiff1 All beta proteins Sm-like fold Sm-like ribonucleoproteins YgdI/YgdR-like automated matches Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08) F d3fiff2 Artifacts Tags Tags Tags C-terminal Tags Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08) E d3fife1 All beta proteins Sm-like fold Sm-like ribonucleoproteins YgdI/YgdR-like automated matches Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08) E d3fife2 Artifacts Tags Tags Tags C-terminal Tags Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08) D d3fifd1 All beta proteins Sm-like fold Sm-like ribonucleoproteins YgdI/YgdR-like automated matches Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08) D d3fifd2 Artifacts Tags Tags Tags C-terminal Tags Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08) C d3fifc1 All beta proteins Sm-like fold Sm-like ribonucleoproteins YgdI/YgdR-like automated matches Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08) C d3fifc2 Artifacts Tags Tags Tags C-terminal Tags Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08) B d3fifb1 All beta proteins Sm-like fold Sm-like ribonucleoproteins YgdI/YgdR-like automated matches Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08) B d3fifb2 Artifacts Tags Tags Tags C-terminal Tags Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08) A d3fifa1 All beta proteins Sm-like fold Sm-like ribonucleoproteins YgdI/YgdR-like automated matches Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08) A d3fifa2 Artifacts Tags Tags Tags C-terminal Tags Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) H SCOP2B Superfamily Sm-like ribonucleoproteins 8034699 3000419 SCOP2B (2022-06-29) G SCOP2B Superfamily Sm-like ribonucleoproteins 8034699 3000419 SCOP2B (2022-06-29) F SCOP2B Superfamily Sm-like ribonucleoproteins 8034699 3000419 SCOP2B (2022-06-29) E SCOP2B Superfamily Sm-like ribonucleoproteins 8034699 3000419 SCOP2B (2022-06-29) D SCOP2B Superfamily Sm-like ribonucleoproteins 8034699 3000419 SCOP2B (2022-06-29) C SCOP2B Superfamily Sm-like ribonucleoproteins 8034699 3000419 SCOP2B (2022-06-29) B SCOP2B Superfamily Sm-like ribonucleoproteins 8034699 3000419 SCOP2B (2022-06-29) A SCOP2B Superfamily Sm-like ribonucleoproteins 8034699 3000419 SCOP2B (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) H WW e3fifH1 A: alpha arrays X: HTH H: HTH T: tetra-helical, lambda repressor-like F: WW ECOD (v295.2) G WW e3fifG1 A: alpha arrays X: HTH H: HTH T: tetra-helical, lambda repressor-like F: WW ECOD (v295.2) F WW e3fifF1 A: alpha arrays X: HTH H: HTH T: tetra-helical, lambda repressor-like F: WW ECOD (v295.2) E WW e3fifE1 A: alpha arrays X: HTH H: HTH T: tetra-helical, lambda repressor-like F: WW ECOD (v295.2) D WW e3fifD1 A: alpha arrays X: HTH H: HTH T: tetra-helical, lambda repressor-like F: WW ECOD (v295.2) C WW e3fifC1 A: alpha arrays X: HTH H: HTH T: tetra-helical, lambda repressor-like F: WW ECOD (v295.2) B WW e3fifB1 A: alpha arrays X: HTH H: HTH T: tetra-helical, lambda repressor-like F: WW ECOD (v295.2) A WW e3fifA1 A: alpha arrays X: HTH H: HTH T: tetra-helical, lambda repressor-like F: WW ECOD (v295.2)
Chains Accession Name Description Comments Source PF06004 Domain of unknown function (DUF903) (DUF903) Domain of unknown function (DUF903) This family consists of several small bacterial proteins including the uncharacterized lipoproteins YgdI and YgdR. The function of these proteins is unknown. Domain
Chains Polymer Molecular Function Biological Process Cellular Component I [auth Y] Uncharacterized ligand - - - Uncharacterized lipoprotein ygdR - -