Skip to main content

 3FI9 | pdb_00003fi9

Crystal structure of malate dehydrogenase from Porphyromonas gingivalis

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd3fi9b1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Porphyromonas gingivalis ATCC 33277 ) [TaxId: 431947 ], SCOPe (2.08)
Bd3fi9b2 Alpha and beta proteins (a+b) LDH C-terminal domain-like LDH C-terminal domain-like automated matches automated matches (Porphyromonas gingivalis ATCC 33277 ) [TaxId: 431947 ], SCOPe (2.08)
Bd3fi9b3 Artifacts Tags Tags Tags N-terminal Tags (Porphyromonas gingivalis ATCC 33277 ) [TaxId: 431947 ], SCOPe (2.08)
Ad3fi9a1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Porphyromonas gingivalis ATCC 33277 ) [TaxId: 431947 ], SCOPe (2.08)
Ad3fi9a2 Alpha and beta proteins (a+b) LDH C-terminal domain-like LDH C-terminal domain-like automated matches automated matches (Porphyromonas gingivalis ATCC 33277 ) [TaxId: 431947 ], SCOPe (2.08)
Ad3fi9a3 Artifacts Tags Tags Tags N-terminal Tags (Porphyromonas gingivalis ATCC 33277 ) [TaxId: 431947 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyLDH/MDH/AglA-like 8059758 3000039 SCOP2B (2022-06-29)
ASCOP2 FamilyLDH/MDH-like 8059757 4000045 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyLDH/MDH/AglA-like 8059758 3000039 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BWWe3fi9B2 A: alpha arraysX: HTHH: HTHT: tetra-helical, lambda repressor-likeF: WWECOD (v295.2)
BLdh_1_Ce3fi9B1 A: alpha arraysX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF: Ldh_1_CECOD (v295.2)
AThioesterasee3fi9A2 A: alpha arraysX: OB-foldH: Nucleic acid-binding proteinT: Nucleic acid-binding proteinF: ThioesteraseECOD (v295.2)
ALdh_1_Ce3fi9A3 A: alpha arraysX: MocoBD/DmpA-relatedH: MocoBD/DmpA-relatedT: Retrovirus capsid protein-CF: Ldh_1_CECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B3.90.110.10 Alpha Beta Alpha-Beta Complex L-2-Hydroxyisocaproate Dehydrogenase Chain A, domain 2CATH (4.3.0)
A3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
A3.90.110.10 Alpha Beta Alpha-Beta Complex L-2-Hydroxyisocaproate Dehydrogenase Chain A, domain 2CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Malate dehydrogenase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR001236Lactate/malate dehydrogenase, N-terminalDomain
A, B
IPR010945Malate dehydrogenase, type 2Family
A, B
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A, B
IPR015955Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminalHomologous Superfamily
A, B
IPR022383Lactate/malate dehydrogenase, C-terminalDomain
A, B
IPR001557L-lactate/malate dehydrogenaseFamily