3ER0
Crystal structure of the full length eIF5A from Saccharomyces cerevisiae
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | eIF-5a | e3er0A3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: eIF-5a | ECOD (1.6) |
A | EFP_N_1 | e3er0A4 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EFP_N_1 | ECOD (1.6) |
B | eIF-5a | e3er0B4 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: eIF-5a | ECOD (1.6) |
B | EFP_N_1 | e3er0B3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EFP_N_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.30.30 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
A | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
B | 2.30.30.30 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
B | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21485 | Translation initiation factor 5A-like, N-terminal (IF5A-like_N) | Translation initiation factor 5A-like, N-terminal | This is the N-terminal domain of Translation initiation factor 5A from eukaryotes and archaea, which has a SH2-like fold. These proteins are involved in translation elongation and eIF5A is specifically required to promote peptide-bond formation betwe ... | Domain | |
PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold (eIF-5a) | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | eIF5A, previously thought to be an initiation factor, has been shown to be required for peptide chain elongation in yeast [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR014722 | Large ribosomal subunit protein uL2, domain 2 | Homologous Superfamily | |
IPR020189 | Translation elongation factor, IF5A C-terminal | Domain | |
IPR008991 | Translation protein SH3-like domain superfamily | Homologous Superfamily | |
IPR019769 | Translation elongation factor, IF5A, hypusine site | PTM | |
IPR001884 | Translation elongation factor IF5A-like | Family | |
IPR048670 | Translation initiation factor 5A-like, N-terminal | Domain | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily |