Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth 3]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040878 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth R]I-set_8e3epfR2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: I-set_8ECOD (1.6)
A [auth R]V-set_15e3epfR1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_15ECOD (1.6)
B [auth 1]Rhv_5e3epf12 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_5ECOD (1.6)
C [auth 2]Rhv_1e3epf21 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_1ECOD (1.6)
D [auth 4]Pico_P1A_Ne3epf41 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Pico_P1A_NECOD (1.6)
E [auth 3]Rhv_3e3epf31 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_3ECOD (1.6)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
A [auth R]PVR (Poliovirus receptor) 1V-1C-LIKE Homo sapiens (human) PVR V-LIKE-DOMAIN V-LIKE, C-LIKE-DOMAIN C-LIKE RPI 1V-1C-LIKE IMGT (202442-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth R]PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.Domain
A [auth R]PF08205CD80-like C2-set immunoglobulin domain (C2-set_2)CD80-like C2-set immunoglobulin domainThese domains belong to the immunoglobulin superfamily.Domain
B [auth 1]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
C [auth 2]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
D [auth 4]PF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family
E [auth 3]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth R]Poliovirus receptor
B [auth 1]Protein VP1
C [auth 2]Protein VP2
D [auth 4]Protein VP4
E [auth 3]Protein VP3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth R]IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A [auth R]IPR052659Nectin and Poliovirus ReceptorFamily
A [auth R]IPR013783Immunoglobulin-like foldHomologous Superfamily
A [auth R]IPR013106Immunoglobulin V-set domainDomain
A [auth R]IPR003599Immunoglobulin domain subtypeDomain
A [auth R]IPR013162CD80-like, immunoglobulin C2-setDomain
A [auth R]IPR007110Immunoglobulin-like domainDomain
B [auth 1]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B [auth 1]IPR002527Picornavirus 2B proteinDomain
B [auth 1]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B [auth 1]IPR003138Picornavirus coat protein VP4Family
B [auth 1]IPR000199Peptidase C3A/C3B, picornaviralDomain
B [auth 1]IPR001676Picornavirus capsidDomain
B [auth 1]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B [auth 1]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth 1]IPR000081Peptidase C3, picornavirus core protein 2ADomain
B [auth 1]IPR029053Viral coat protein subunitHomologous Superfamily
B [auth 1]IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth 1]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth 1]IPR044067Picornavirales 3C/3C-like protease domainDomain
B [auth 1]IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth 1]IPR014838Poliovirus 3A protein-likeDomain
B [auth 1]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
B [auth 1]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
B [auth 1]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth 1]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
C [auth 2]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth 2]IPR002527Picornavirus 2B proteinDomain
C [auth 2]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth 2]IPR003138Picornavirus coat protein VP4Family
C [auth 2]IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth 2]IPR001676Picornavirus capsidDomain
C [auth 2]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth 2]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth 2]IPR000081Peptidase C3, picornavirus core protein 2ADomain
C [auth 2]IPR029053Viral coat protein subunitHomologous Superfamily
C [auth 2]IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth 2]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth 2]IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth 2]IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth 2]IPR014838Poliovirus 3A protein-likeDomain
C [auth 2]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
C [auth 2]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth 2]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth 2]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
D [auth 4]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
D [auth 4]IPR002527Picornavirus 2B proteinDomain
D [auth 4]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
D [auth 4]IPR003138Picornavirus coat protein VP4Family
D [auth 4]IPR000199Peptidase C3A/C3B, picornaviralDomain
D [auth 4]IPR001676Picornavirus capsidDomain
D [auth 4]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
D [auth 4]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth 4]IPR000081Peptidase C3, picornavirus core protein 2ADomain
D [auth 4]IPR029053Viral coat protein subunitHomologous Superfamily
D [auth 4]IPR009003Peptidase S1, PA clanHomologous Superfamily
D [auth 4]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
D [auth 4]IPR044067Picornavirales 3C/3C-like protease domainDomain
D [auth 4]IPR033703Picornavirus/Calicivirus coat proteinDomain
D [auth 4]IPR014838Poliovirus 3A protein-likeDomain
D [auth 4]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
D [auth 4]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
D [auth 4]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
D [auth 4]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
E [auth 3]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
E [auth 3]IPR002527Picornavirus 2B proteinDomain
E [auth 3]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
E [auth 3]IPR003138Picornavirus coat protein VP4Family
E [auth 3]IPR000199Peptidase C3A/C3B, picornaviralDomain
E [auth 3]IPR001676Picornavirus capsidDomain
E [auth 3]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
E [auth 3]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth 3]IPR000081Peptidase C3, picornavirus core protein 2ADomain
E [auth 3]IPR029053Viral coat protein subunitHomologous Superfamily
E [auth 3]IPR009003Peptidase S1, PA clanHomologous Superfamily
E [auth 3]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
E [auth 3]IPR044067Picornavirales 3C/3C-like protease domainDomain
E [auth 3]IPR033703Picornavirus/Calicivirus coat proteinDomain
E [auth 3]IPR014838Poliovirus 3A protein-likeDomain
E [auth 3]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
E [auth 3]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
E [auth 3]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
E [auth 3]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain