Annotations: 3EOO

2.9A crystal structure of methyl-isocitrate lyase from Burkholderia pseudomallei

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
P	d3eoop_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Phosphoenolpyruvate/pyruvate domain	Phosphoenolpyruvate mutase/Isocitrate lyase-like	automated matches	(Burkholderia pseudomallei 1655 ) [TaxId: 331109 ],	SCOPe (2.08)
O	d3eooo_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Phosphoenolpyruvate/pyruvate domain	Phosphoenolpyruvate mutase/Isocitrate lyase-like	automated matches	(Burkholderia pseudomallei 1655 ) [TaxId: 331109 ],	SCOPe (2.08)
N	d3eoon_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Phosphoenolpyruvate/pyruvate domain	Phosphoenolpyruvate mutase/Isocitrate lyase-like	automated matches	(Burkholderia pseudomallei 1655 ) [TaxId: 331109 ],	SCOPe (2.08)
M	d3eoom_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Phosphoenolpyruvate/pyruvate domain	Phosphoenolpyruvate mutase/Isocitrate lyase-like	automated matches	(Burkholderia pseudomallei 1655 ) [TaxId: 331109 ],	SCOPe (2.08)
L	d3eool_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Phosphoenolpyruvate/pyruvate domain	Phosphoenolpyruvate mutase/Isocitrate lyase-like	automated matches	(Burkholderia pseudomallei 1655 ) [TaxId: 331109 ],	SCOPe (2.08)
K	d3eook_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Phosphoenolpyruvate/pyruvate domain	Phosphoenolpyruvate mutase/Isocitrate lyase-like	automated matches	(Burkholderia pseudomallei 1655 ) [TaxId: 331109 ],	SCOPe (2.08)
J	d3eooj_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Phosphoenolpyruvate/pyruvate domain	Phosphoenolpyruvate mutase/Isocitrate lyase-like	automated matches	(Burkholderia pseudomallei 1655 ) [TaxId: 331109 ],	SCOPe (2.08)
I	d3eooi_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Phosphoenolpyruvate/pyruvate domain	Phosphoenolpyruvate mutase/Isocitrate lyase-like	automated matches	(Burkholderia pseudomallei 1655 ) [TaxId: 331109 ],	SCOPe (2.08)
H	d3eooh_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Phosphoenolpyruvate/pyruvate domain	Phosphoenolpyruvate mutase/Isocitrate lyase-like	automated matches	(Burkholderia pseudomallei 1655 ) [TaxId: 331109 ],	SCOPe (2.08)
G	d3eoog_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Phosphoenolpyruvate/pyruvate domain	Phosphoenolpyruvate mutase/Isocitrate lyase-like	automated matches	(Burkholderia pseudomallei 1655 ) [TaxId: 331109 ],	SCOPe (2.08)
F	d3eoof_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Phosphoenolpyruvate/pyruvate domain	Phosphoenolpyruvate mutase/Isocitrate lyase-like	automated matches	(Burkholderia pseudomallei 1655 ) [TaxId: 331109 ],	SCOPe (2.08)
E	d3eooe_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Phosphoenolpyruvate/pyruvate domain	Phosphoenolpyruvate mutase/Isocitrate lyase-like	automated matches	(Burkholderia pseudomallei 1655 ) [TaxId: 331109 ],	SCOPe (2.08)
D	d3eood_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Phosphoenolpyruvate/pyruvate domain	Phosphoenolpyruvate mutase/Isocitrate lyase-like	automated matches	(Burkholderia pseudomallei 1655 ) [TaxId: 331109 ],	SCOPe (2.08)
C	d3eooc_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Phosphoenolpyruvate/pyruvate domain	Phosphoenolpyruvate mutase/Isocitrate lyase-like	automated matches	(Burkholderia pseudomallei 1655 ) [TaxId: 331109 ],	SCOPe (2.08)
B	d3eoob_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Phosphoenolpyruvate/pyruvate domain	Phosphoenolpyruvate mutase/Isocitrate lyase-like	automated matches	(Burkholderia pseudomallei 1655 ) [TaxId: 331109 ],	SCOPe (2.08)
A	d3eooa_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Phosphoenolpyruvate/pyruvate domain	Phosphoenolpyruvate mutase/Isocitrate lyase-like	automated matches	(Burkholderia pseudomallei 1655 ) [TaxId: 331109 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	zf-CCCH_4	e3eooP1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: zf-CCCH_4	ECOD (v295.2)
O	zf-CCCH_4	e3eooO1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: zf-CCCH_4	ECOD (v295.2)
N	zf-CCCH_4	e3eooN1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: zf-CCCH_4	ECOD (v295.2)
M	zf-CCCH_4	e3eooM1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: zf-CCCH_4	ECOD (v295.2)
L	zf-CCCH_4	e3eooL1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: zf-CCCH_4	ECOD (v295.2)
K	zf-CCCH_4	e3eooK1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: zf-CCCH_4	ECOD (v295.2)
J	zf-CCCH_4	e3eooJ1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: zf-CCCH_4	ECOD (v295.2)
I	zf-CCCH_4	e3eooI1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: zf-CCCH_4	ECOD (v295.2)
H	zf-CCCH_4	e3eooH1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: zf-CCCH_4	ECOD (v295.2)
G	zf-CCCH_4	e3eooG1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: zf-CCCH_4	ECOD (v295.2)
F	zf-CCCH_4	e3eooF1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: zf-CCCH_4	ECOD (v295.2)
E	zf-CCCH_4	e3eooE1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: zf-CCCH_4	ECOD (v295.2)
D	zf-CCCH_4	e3eooD1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: zf-CCCH_4	ECOD (v295.2)
C	zf-CCCH_4	e3eooC1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: zf-CCCH_4	ECOD (v295.2)
B	zf-CCCH_4	e3eooB1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: zf-CCCH_4	ECOD (v295.2)
A	V-set	e3eooA1	A: alpha arrays	X: Profilin-like	H: sensor domains	T: sensor domains	F: V-set	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P	3.20.20.60	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphoenolpyruvate-binding domains	CATH (4.3.0)
O	3.20.20.60	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphoenolpyruvate-binding domains	CATH (4.3.0)
N	3.20.20.60	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphoenolpyruvate-binding domains	CATH (4.3.0)
M	3.20.20.60	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphoenolpyruvate-binding domains	CATH (4.3.0)
L	3.20.20.60	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphoenolpyruvate-binding domains	CATH (4.3.0)
K	3.20.20.60	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphoenolpyruvate-binding domains	CATH (4.3.0)
J	3.20.20.60	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphoenolpyruvate-binding domains	CATH (4.3.0)
I	3.20.20.60	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphoenolpyruvate-binding domains	CATH (4.3.0)
H	3.20.20.60	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphoenolpyruvate-binding domains	CATH (4.3.0)
G	3.20.20.60	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphoenolpyruvate-binding domains	CATH (4.3.0)
F	3.20.20.60	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphoenolpyruvate-binding domains	CATH (4.3.0)
E	3.20.20.60	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphoenolpyruvate-binding domains	CATH (4.3.0)
D	3.20.20.60	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphoenolpyruvate-binding domains	CATH (4.3.0)
C	3.20.20.60	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphoenolpyruvate-binding domains	CATH (4.3.0)
B	3.20.20.60	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphoenolpyruvate-binding domains	CATH (4.3.0)
A	3.20.20.60	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphoenolpyruvate-binding domains	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF13714	Phosphoenolpyruvate phosphomutase (PEP_mutase)	Phosphoenolpyruvate phosphomutase	This domain includes the enzyme Phosphoenolpyruvate phosphomutase (EC:5.4.2.9). This protein Swiss:O86937 has been characterised as catalysing the formation of a carbon-phosphorus bond by converting phosphoenolpyruvate (PEP) to phosphonopyruvate (P-P ...	This domain includes the enzyme Phosphoenolpyruvate phosphomutase (EC:5.4.2.9). This protein Swiss:O86937 has been characterised as catalysing the formation of a carbon-phosphorus bond by converting phosphoenolpyruvate (PEP) to phosphonopyruvate (P-Pyr) [1]. This enzyme has a TIM barrel fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	Methylisocitrate lyase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding oxo-acid-lyase activity methylisocitrate lyase activity lyase activity catalytic activity carbon-carbon lyase activity isocitrate lyase activity	fatty acid metabolic process short-chain fatty acid catabolic process lipid catabolic process catabolic process oxoacid metabolic process short-chain fatty acid metabolic process carboxylic acid metabolic process primary metabolic process fatty acid catabolic process propionate catabolic process monocarboxylic acid catabolic process carboxylic acid catabolic process metabolic process cellular process fatty acid metabolic process short-chain fatty acid catabolic process lipid catabolic process catabolic process oxoacid metabolic process short-chain fatty acid metabolic process carboxylic acid metabolic process primary metabolic process fatty acid catabolic process propionate catabolic process monocarboxylic acid catabolic process carboxylic acid catabolic process metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process small molecule catabolic process lipid metabolic process propionate metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR015813	Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR018523	Isocitrate lyase/phosphorylmutase, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR012695	2-methylisocitrate lyase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR039556	ICL/PEPM domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR040442	Pyruvate kinase-like domain superfamily	Homologous Superfamily