3ENB
Crystal Structure of PRP8 core domain IV
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3enba1 | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | Prp8 beta-finger domain-like | Pre-mRNA splicing factor 8, Prp8 / Spp42 | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d3enbb_ | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | Prp8 beta-finger domain-like | Pre-mRNA splicing factor 8, Prp8 / Spp42 | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Prp8 beta-finger domain-like | 8028726 | 4002290 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ribonuclease H-like | 8041105 | 3000143 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Ribonuclease H-like | 8041105 | 3000143 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF12134 | e3enbA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF12134 | ECOD (1.6) |
B | PF12134 | e3enbB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF12134 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.420.230 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
A | 1.20.80.40 | Mainly Alpha | Up-down Bundle | Acyl-CoA Binding Protein | Prp8 RNase H domain, fingers region | CATH (4.3.0) |
B | 3.30.420.230 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
B | 1.20.80.40 | Mainly Alpha | Up-down Bundle | Acyl-CoA Binding Protein | Prp8 RNase H domain, fingers region | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012984 | PROCT domain | Domain | |
IPR012591 | PRO8NT domain | Domain | |
IPR019580 | Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding | Domain | |
IPR027652 | Pre-mRNA-processing-splicing factor 8 | Family | |
IPR043172 | Prp8 RNase domain IV, palm region | Homologous Superfamily | |
IPR012592 | PROCN domain | Domain | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily | |
IPR043173 | Prp8 RNase domain IV, fingers region | Homologous Superfamily | |
IPR021983 | PRP8 domain IV core | Domain | |
IPR019581 | Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding | Domain | |
IPR037518 | MPN domain | Domain | |
IPR019582 | RNA recognition motif, spliceosomal PrP8 | Domain | |
IPR042516 | Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily | Homologous Superfamily | |
IPR000555 | JAB1/MPN/MOV34 metalloenzyme domain | Domain |