Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyCobE/GbiG C-terminal domain-like 8028643 4002316 SCOP2 (2022-06-29)
ASCOP2 FamilyCbiG N-terminal domain-like 8028644 4002320 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyCobE/GbiG C-terminal domain-like 8041022 3001090 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyCbiG N-terminal domain-like 8041023 3001100 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyCobE/GbiG C-terminal domain-like 8041022 3001090 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCbiG N-terminal domain-like 8041023 3001100 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACbiG_Ne3eeqA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: CbiG N-terminal domain-like (From Topology)T: CbiG N-terminal domain-likeF: CbiG_NECOD (1.6)
ACbiG_Ce3eeqA3 A: a/b three-layered sandwichesX: CobE/CbiG C-terminal domain-like (From Topology)H: CobE/CbiG C-terminal domain-like (From Topology)T: CobE/CbiG C-terminal domain-likeF: CbiG_CECOD (1.6)
APRK05788_likee3eeqA2 A: a/b three-layered sandwichesX: CbiG linker domain (From Topology)H: CbiG linker domain (From Topology)T: CbiG linker domainF: PRK05788_likeECOD (1.6)
BCbiG_Ne3eeqB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: CbiG N-terminal domain-like (From Topology)T: CbiG N-terminal domain-likeF: CbiG_NECOD (1.6)
BCbiG_Ce3eeqB3 A: a/b three-layered sandwichesX: CobE/CbiG C-terminal domain-like (From Topology)H: CobE/CbiG C-terminal domain-like (From Topology)T: CobE/CbiG C-terminal domain-likeF: CbiG_CECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF11760Cobalamin synthesis G N-terminal (CbiG_N)Cobalamin synthesis G N-terminalMembers of this family are involved in cobalamin synthesis. The gene encoded by Swiss:P72862 has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis cataly ...Members of this family are involved in cobalamin synthesis. The gene encoded by Swiss:P72862 has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process [1]. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B [2]. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear.
Domain
A, B
PF01890Cobalamin synthesis G C-terminus (CbiG_C)Cobalamin synthesis G C-terminusMembers of this family are involved in cobalamin synthesis. The gene encoded by Swiss:P72862 has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis cataly ...Members of this family are involved in cobalamin synthesis. The gene encoded by Swiss:P72862 has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process [1]. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B [2]. This family is the C-terminal region, and the mid- and N-termival parts are conserved independently in other families.
Domain
A, B
PF21437CbiG-like, linker domain (CbiG-like_linker)CbiG-like, linker domainThis domain is found once in the putative Cobalamin biosynthesis protein G homolog from the archaea Saccharolobus solfataricus (CbiG-like), C-terminal to Pfam:PF11760 and N-terminal to Pfam:PF01890. It is also found several times in uncharact ...This domain is found once in the putative Cobalamin biosynthesis protein G homolog from the archaea Saccharolobus solfataricus (CbiG-like), C-terminal to Pfam:PF11760 and N-terminal to Pfam:PF01890. It is also found several times in uncharacterised proteins from lower eukaryotes, some of which also contain ankyrin repeats (Pfam:PF00023, Pfam:PF12796, Pfam:PF13637, Pfam:PF13857, Pfam:PF13606).
Domain