3E0D
Insights into the Replisome from the Crystral Structure of the Ternary Complex of the Eubacterial DNA Polymerase III alpha-subunit
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | PF01336 | e3e0dA6 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01336 | ECOD (1.6) |
E [auth A] | PF14579 | e3e0dA1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF14579 | ECOD (1.6) |
E [auth A] | PF17657 | e3e0dA3 | A: alpha arrays | X: DNA polymerase III finger domain (From Topology) | H: DNA polymerase III finger domain (From Topology) | T: DNA polymerase III finger domain | F: PF17657 | ECOD (1.6) |
E [auth A] | F_UNCLASSIFIED | e3e0dA2 | A: a+b two layers | X: DNA polymerase III C-terminal domain (From Topology) | H: DNA polymerase III C-terminal domain (From Topology) | T: DNA polymerase III C-terminal domain | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth A] | PF07733 | e3e0dA4 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: PF07733 | ECOD (1.6) |
E [auth A] | PF02811 | e3e0dA5 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF02811 | ECOD (1.6) |
F [auth B] | PF01336 | e3e0dB3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01336 | ECOD (1.6) |
F [auth B] | PF14579 | e3e0dB5 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF14579 | ECOD (1.6) |
F [auth B] | PF17657 | e3e0dB2 | A: alpha arrays | X: DNA polymerase III finger domain (From Topology) | H: DNA polymerase III finger domain (From Topology) | T: DNA polymerase III finger domain | F: PF17657 | ECOD (1.6) |
F [auth B] | F_UNCLASSIFIED | e3e0dB7 | A: a+b two layers | X: DNA polymerase III C-terminal domain (From Topology) | H: DNA polymerase III C-terminal domain (From Topology) | T: DNA polymerase III C-terminal domain | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth B] | PF07733 | e3e0dB6 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: PF07733 | ECOD (1.6) |
F [auth B] | PF02811 | e3e0dB4 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF02811 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth A], F [auth B] | PF02811 | PHP domain (PHP) | PHP domain | - | Family |
E [auth A], F [auth B] | PF07733 | Bacterial DNA polymerase III alpha NTPase domain (DNA_pol3_alpha) | Bacterial DNA polymerase III alpha NTPase domain | - | Domain |
E [auth A], F [auth B] | PF17657 | Bacterial DNA polymerase III alpha subunit finger domain (DNA_pol3_finger) | Bacterial DNA polymerase III alpha subunit finger domain | - | Domain |
E [auth A], F [auth B] | PF14579 | Helix-hairpin-helix motif (HHH_6) | Helix-hairpin-helix motif | The HHH domain is a short DNA-binding domain [1]. | Domain |
E [auth A], F [auth B] | PF01336 | OB-fold nucleic acid binding domain (tRNA_anti-codon) | OB-fold nucleic acid binding domain | This family contains OB-fold domains that bind to nucleic acids [4]. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See Pfam:PF00152). Aminoacyl-tRNA synthetases catalyse the addition of an a ... | Domain |