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 3DME | pdb_00003dme

Crystal structure of conserved exported protein from Bordetella pertussis. NorthEast Structural Genomics target BeR141

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPeptidase_M23e3dmeB2 A: alpha arraysX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: amino-terminal domain of OmpATbF: Peptidase_M23ECOD (v295.2)
BSETe3dmeB3 A: alpha arraysX: Rossmann-likeH: 26S proteasome subunit Rpn2 C-terminal domainT: 26S proteasome subunit Rpn2 C-terminal domainF: SETECOD (v295.2)
APeptidase_M23e3dmeA1 A: alpha arraysX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: amino-terminal domain of OmpATbF: Peptidase_M23ECOD (v295.2)
ADNA_polI_exo1e3dmeA2 A: alpha arraysX: Alpha helical domain of ribonucleotide reductasesH: Alpha helical domain of ribonucleotide reductasesT: Alpha helical domain of ribonucleotide reductasesF: DNA_polI_exo1ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.50.50.60 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain FAD/NAD(P)-binding domainCATH (4.3.0)
B3.30.9.10 Alpha Beta 2-Layer Sandwich D-Amino Acid Oxidase Chain A, domain 2CATH (4.3.0)
A3.50.50.60 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain FAD/NAD(P)-binding domainCATH (4.3.0)
A3.30.9.10 Alpha Beta 2-Layer Sandwich D-Amino Acid Oxidase Chain A, domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF01266FAD dependent oxidoreductase (DAO)FAD dependent oxidoreductaseThis family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
conserved exported protein - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR006076FAD dependent oxidoreductaseDomain
A, B
IPR036188FAD/NAD(P)-binding domain superfamilyHomologous Superfamily