3D8A

Co-crystal structure of TraM-TraD complex.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3d8aa_	All alpha proteins	TraM-like	TraM-like	TraM-like	TraM	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d3d8ab_	All alpha proteins	TraM-like	TraM-like	TraM-like	TraM	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
C	d3d8ac_	All alpha proteins	TraM-like	TraM-like	TraM-like	TraM	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
D	d3d8ad_	All alpha proteins	TraM-like	TraM-like	TraM-like	TraM	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
E	d3d8ae_	All alpha proteins	TraM-like	TraM-like	TraM-like	TraM	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
F	d3d8af_	All alpha proteins	TraM-like	TraM-like	TraM-like	TraM	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
G	d3d8ag_	All alpha proteins	TraM-like	TraM-like	TraM-like	TraM	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
H	d3d8ah_	All alpha proteins	TraM-like	TraM-like	TraM-like	TraM	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	TraM-like	8041724	3001333	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TraM-like	8041724	3001333	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TraM-like	8041724	3001333	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TraM-like	8041724	3001333	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	TraM-like	8041724	3001333	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	TraM-like	8041724	3001333	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TraM-like	8041724	3001333	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	TraM-like	8041724	3001333	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Tra_M_C	e3d8aA1	A: alpha duplicates or obligate multimers	X: TraM-like (From Topology)	H: TraM-like (From Topology)	T: TraM-like	F: Tra_M_C	ECOD (1.6)
B	Tra_M_C	e3d8aB1	A: alpha duplicates or obligate multimers	X: TraM-like (From Topology)	H: TraM-like (From Topology)	T: TraM-like	F: Tra_M_C	ECOD (1.6)
C	Tra_M_C	e3d8aC1	A: alpha duplicates or obligate multimers	X: TraM-like (From Topology)	H: TraM-like (From Topology)	T: TraM-like	F: Tra_M_C	ECOD (1.6)
D	Tra_M_C	e3d8aD1	A: alpha duplicates or obligate multimers	X: TraM-like (From Topology)	H: TraM-like (From Topology)	T: TraM-like	F: Tra_M_C	ECOD (1.6)
E	Tra_M_C	e3d8aE1	A: alpha duplicates or obligate multimers	X: TraM-like (From Topology)	H: TraM-like (From Topology)	T: TraM-like	F: Tra_M_C	ECOD (1.6)
F	Tra_M_C	e3d8aF1	A: alpha duplicates or obligate multimers	X: TraM-like (From Topology)	H: TraM-like (From Topology)	T: TraM-like	F: Tra_M_C	ECOD (1.6)
G	Tra_M_C	e3d8aG1	A: alpha duplicates or obligate multimers	X: TraM-like (From Topology)	H: TraM-like (From Topology)	T: TraM-like	F: Tra_M_C	ECOD (1.6)
H	Tra_M_C	e3d8aH1	A: alpha duplicates or obligate multimers	X: TraM-like (From Topology)	H: TraM-like (From Topology)	T: TraM-like	F: Tra_M_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.287.2320	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
B	1.10.287.2320	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
C	1.10.287.2320	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
D	1.10.287.2320	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
E	1.10.287.2320	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
F	1.10.287.2320	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
G	1.10.287.2320	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
H	1.10.287.2320	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Relaxosome protein TraM	DNA binding binding organic cyclic compound binding nucleic acid binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm
I [auth S], J [auth T], K [auth U], L [auth V], M [auth W], I [auth S], J [auth T], K [auth U], L [auth V], M [auth W], N [auth X], O [auth Y], P [auth Z]	Protein traD	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	horizontal gene transfer unidirectional conjugation cellular process	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR010992	Integration host factor (IHF)-like DNA-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR042073	TraM, DNA-binding domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR007925	Relaxosome protein TraM	Family
I [auth S], J [auth T], K [auth U], L [auth V], M [auth W], I [auth S], J [auth T], K [auth U], L [auth V], M [auth W], N [auth X], O [auth Y], P [auth Z]	IPR019476	Type IV secretion system coupling protein TraD, DNA-binding domain	Domain
I [auth S], J [auth T], K [auth U], L [auth V], M [auth W], I [auth S], J [auth T], K [auth U], L [auth V], M [auth W], N [auth X], O [auth Y], P [auth Z]	IPR022585	TraD coupling protein, N-terminal	Domain
I [auth S], J [auth T], K [auth U], L [auth V], M [auth W], I [auth S], J [auth T], K [auth U], L [auth V], M [auth W], N [auth X], O [auth Y], P [auth Z]	IPR051539	Type IV secretion system-coupling protein	Family
I [auth S], J [auth T], K [auth U], L [auth V], M [auth W], I [auth S], J [auth T], K [auth U], L [auth V], M [auth W], N [auth X], O [auth Y], P [auth Z]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
I [auth S], J [auth T], K [auth U], L [auth V], M [auth W], I [auth S], J [auth T], K [auth U], L [auth V], M [auth W], N [auth X], O [auth Y], P [auth Z]	IPR014128	Type IV conjugative transfer system, coupling protein TraD	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.