3D3B
Structural and functional analysis of the E. coli NusB-S10 transcription antitermination complex.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3d3ba_ | All alpha proteins | NusB-like | NusB-like | Antitermination factor NusB | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | NusB-like | 8038005 | 3000679 | SCOP2B (2021-05-27) |
B [auth J] | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01029 | e3d3bA1 | A: alpha complex topology | X: NusB-like (From Topology) | H: NusB-like (From Topology) | T: NusB-like | F: PF01029 | ECOD (1.6) |
B [auth J] | PF00338 | e3d3bJ1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.940.10 | Mainly Alpha | Orthogonal Bundle | N-utilizing Substance Protein B Homolog | Chain A | CATH (4.3.0) |
B [auth J] | 3.30.70.600 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Ribosomal protein S10 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01029 | NusB family (NusB) | NusB family | The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination. | Domain | |
B [auth J] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR035926 | NusB-like superfamily | Homologous Superfamily | |
IPR011605 | NusB antitermination factor | Family | |
IPR006027 | NusB/RsmB/TIM44 | Domain | |
B [auth J] | IPR027486 | Small ribosomal subunit protein uS10 domain | Domain |
B [auth J] | IPR036838 | Small ribosomal subunit protein uS10 domain superfamily | Homologous Superfamily |
B [auth J] | IPR018268 | Small ribosomal subunit protein uS10, conserved site | Conserved Site |
B [auth J] | IPR001848 | Small ribosomal subunit protein uS10 | Family |