3D37

The crystal structure of the tail protein from Neisseria meningitidis MC58

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3d37a2	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, C-terminal domain	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
A	d3d37a1	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, N-terminal domain	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
B	d3d37b2	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, C-terminal domain	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
B	d3d37b1	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, N-terminal domain	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Baseplate protein-like	8028056	4003106	SCOP2 (2022-06-29)
A	SCOP2 Family	Baseplate protein-like	8028057	4003106	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Phage tail proteins	8040435	3000268	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Phage tail proteins	8040436	3000268	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Phage tail proteins	8040436	3000268	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phage tail proteins	8040435	3000268	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	COG4379_4th	e3d37A2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: COG4379_4th	ECOD (1.6)
A	COG4379_1st	e3d37A5	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: COG4379_1st	ECOD (1.6)
A	COG4379_2nd	e3d37A6	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: COG4379_2nd	ECOD (1.6)
A	COG4379_3rd	e3d37A1	A: a+b complex topology	X: C-terminal insertion domain in phage tail proteins (From Topology)	H: C-terminal insertion domain in phage tail proteins (From Topology)	T: C-terminal insertion domain in phage tail proteins	F: COG4379_3rd	ECOD (1.6)
B	COG4379_4th	e3d37B2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: COG4379_4th	ECOD (1.6)
B	COG4379_1st	e3d37B3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: COG4379_1st	ECOD (1.6)
B	COG4379_2nd	e3d37B4	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: COG4379_2nd	ECOD (1.6)
B	COG4379_3rd	e3d37B1	A: a+b complex topology	X: C-terminal insertion domain in phage tail proteins (From Topology)	H: C-terminal insertion domain in phage tail proteins (From Topology)	T: C-terminal insertion domain in phage tail proteins	F: COG4379_3rd	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.300.10	Mainly Beta	Roll	Phage tail proteins - horseshoe like beta roll fold	Baseplate protein-like domain - beta roll fold	CATH (4.3.0)
A	3.55.50.10	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Baseplate protein-like domains	CATH (4.3.0)
A	3.30.1920.10	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold	Baseplate protein-like domains - 2 layer sandwich fold	CATH (4.3.0)
B	2.30.300.10	Mainly Beta	Roll	Phage tail proteins - horseshoe like beta roll fold	Baseplate protein-like domain - beta roll fold	CATH (4.3.0)
B	3.55.50.10	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Baseplate protein-like domains	CATH (4.3.0)
B	3.30.1920.10	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold	Baseplate protein-like domains - 2 layer sandwich fold	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF22630	Baseplate hub protein gp44-like, third domain (Gp44-like_3rd)	Baseplate hub protein gp44-like, third domain	This domain is found in Baseplate hub protein gp44 from Bacteriophage Mu, which is thought to form the central cylindrical hub of the baseplate and play an important role in baseplate and tail assembly. This domain is located C-terminal to Pfam:PF222 ...	This domain is found in Baseplate hub protein gp44 from Bacteriophage Mu, which is thought to form the central cylindrical hub of the baseplate and play an important role in baseplate and tail assembly. This domain is located C-terminal to Pfam:PF22255 and N-terminal to Pfam:PF22174.	Domain
A, B	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal (GpP-like_1st)	Mu phage baseplate assembly protein GpP-like, N-terminal	This domain is found at the N-terminal end of Mu phage baseplate assembly protein GpP from Shewanella oneidensis and similar proteins predominantly found in tailed bacteriophages and bacterial prophages.	Domain
A, B	PF22255	Baseplate hub protein gp44-like, second domain (Gp44-like_2nd)	Baseplate hub protein gp44-like, second domain	This domain is found in Baseplate hub protein gp44 from Escherichia phage Mu and similar proteins found in tailed bacteriophages and proteobacterial prophages. This domain is located C-terminal to Pfam:PF21683 and N-terminal to Pfam:PF21929.	Domain
A, B	PF22174	Tail protein, C-terminal domain (NMB1110-like_C)	Tail protein, C-terminal domain	This domain is found at the C-terminal end of Tail protein, 43 kDa Neisseria meningitidis (NMB1110) and similar sequences found in tailed bacteriophages and prophages from proteobacteria. This domain is usually found associated with Pfam:PF21683.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR049354	Baseplate hub protein gp44-like, N-terminal	Domain
A, B	IPR023399	Baseplate-like, two-layer sandwich fold	Homologous Superfamily
A, B	IPR026276	Baseplate protein GpP	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.