3CYG

Crystal structure of an uncharacterized protein from Fervidobacterium nodosum Rt17-B1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Peptidoglycan deacetylase N-terminal noncatalytic region	8092031	3000265	SCOP2B (2022-06-29)
B	SCOP2 Family	MPT64-like	8046918	4005367	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Peptidoglycan deacetylase N-terminal noncatalytic region	8092031	3000265	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF3298	e3cygA1	A: a+b two layers	X: Peptidoglycan deacetylase N-terminal noncatalytic region (From Topology)	H: Peptidoglycan deacetylase N-terminal noncatalytic region (From Topology)	T: Peptidoglycan deacetylase N-terminal noncatalytic region	F: DUF3298	ECOD (1.6)
B	DUF3298	e3cygB1	A: a+b two layers	X: Peptidoglycan deacetylase N-terminal noncatalytic region (From Topology)	H: Peptidoglycan deacetylase N-terminal noncatalytic region (From Topology)	T: Peptidoglycan deacetylase N-terminal noncatalytic region	F: DUF3298	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.565.40	Alpha Beta	2-Layer Sandwich	Heat Shock Protein 90	Fervidobacterium nodosum Rt17-B1 like	CATH (4.3.0)
A	3.90.640.20	Alpha Beta	Alpha-Beta Complex	Actin	Chain A, domain 4	CATH (4.3.0)
B	3.30.565.40	Alpha Beta	2-Layer Sandwich	Heat Shock Protein 90	Fervidobacterium nodosum Rt17-B1 like	CATH (4.3.0)
B	3.90.640.20	Alpha Beta	Alpha-Beta Complex	Actin	Chain A, domain 4	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF13739	Deacetylase PdaC (PdaC)	Deacetylase PdaC	This domain forms an alpha-beta-two layer sandwich. It is found in the Bacillus subtilis proteins anti-sigma-V factor RsiV, which downregulates SigV activity [1], and peptidoglycan-N-acetylmuramic acid deacetylase PdaC, which catalyzes the deacetylat ...	This domain forms an alpha-beta-two layer sandwich. It is found in the Bacillus subtilis proteins anti-sigma-V factor RsiV, which downregulates SigV activity [1], and peptidoglycan-N-acetylmuramic acid deacetylase PdaC, which catalyzes the deacetylation of N-acetylmuramic acid which makes the peptidoglycan resistant to lysosyme [2]. It is found in association with Heat-shock cognate 70kd protein 44kd ATPase, Pfam:PF11738.	Domain
A, B	PF11738	Protein of unknown function (DUF3298) (DUF3298)	Protein of unknown function (DUF3298)	This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-sho ...	This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-shock cognate 70kd protein 44kd ATPase.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Uncharacterized protein	-	-	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR037126	PdaC/RsiV-like superfamily	Homologous Superfamily
A, B	IPR021729	Domain of unknown function DUF3298	Domain
A, B	IPR025303	Deacetylase PdaC	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.