3CWZ
Structure of RAB6(GTP)-R6IP1 complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ras | e3cwzA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
B | PLAT | e3cwzB4 | A: beta sandwiches | X: jelly-roll | H: Lipase/lipooxygenase domain (PLAT/LH2 domain) (From Topology) | T: Lipase/lipooxygenase domain (PLAT/LH2 domain) | F: PLAT | ECOD (1.6) |
B | RUN | e3cwzB3 | A: alpha arrays | X: RUN domain (From Topology) | H: RUN domain (From Topology) | T: RUN domain | F: RUN | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
B | 1.20.58.900 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
B | 6.10.250.800 | Special | Helix non-globular | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
B | 2.60.60.20 | Mainly Beta | Sandwich | Lipoxygenase-1 | PLAT/LH2 domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain | |
PF02759 | RUN domain (RUN) | RUN domain | - | Family | |
PF01477 | PLAT/LH2 domain (PLAT) | PLAT/LH2 domain | This domain is found in a variety of membrane or lipid associated proteins. It is called the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain. The known structure of pancreatic lipase shows this domain bind ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR005225 | Small GTP-binding domain | Domain | |
IPR001806 | Small GTPase | Family | |
IPR050227 | Ras-related protein Rab | Family | |
IPR037213 | RUN domain superfamily | Homologous Superfamily | |
IPR005113 | uDENN domain | Domain | |
IPR004012 | RUN domain | Domain | |
IPR037516 | Tripartite DENN domain | Domain | |
IPR005112 | dDENN domain | Domain | |
IPR047278 | DENN domain-containing protein 5A/B | Family | |
IPR036392 | PLAT/LH2 domain superfamily | Homologous Superfamily | |
IPR043153 | DENN domain, C-terminal lobe | Homologous Superfamily | |
IPR047277 | DENN domain-containing protein 5A/B, PLAT/LH2 domain | Domain | |
IPR001024 | PLAT/LH2 domain | Domain | |
IPR001194 | cDENN domain | Domain | |
IPR047295 | DENN domain-containing protein 5A, second RUN domain | Domain | |
IPR047294 | DENN domain-containing protein 5A, first RUN domain | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
P20340 | : 
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | PLAT domain |