3CVZ
Structural insights into the molecular organization of the S-layer from Clostridium difficile
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cwp8 N-terminal domain-like | 8056046 | 3002336 | SCOP2B (2022-06-29) |
B | SCOP2 Family | SlpA N-terminal domain-like | 8047346 | 4005595 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Cwp8 N-terminal domain-like | 8056046 | 3002336 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | Cwp8 N-terminal domain-like | 8056046 | 3002336 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Cwp8 N-terminal domain-like | 8056046 | 3002336 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | LMWSLP_N_2nd | e3cvzA2 | A: beta complex topology | X: Mainly beta domain in low-molecular-weight S-layer protein (From Topology) | H: Mainly beta domain in low-molecular-weight S-layer protein (From Topology) | T: Mainly beta domain in low-molecular-weight S-layer protein | F: LMWSLP_N_2nd | ECOD (1.6) |
A | LMWSLP_N_1st | e3cvzA1 | A: a+b two layers | X: Reverse ferredoxin | H: a+b domain in low-molecular-weight S-layer protein (From Topology) | T: a+b domain in low-molecular-weight S-layer protein | F: LMWSLP_N_1st | ECOD (1.6) |
B | LMWSLP_N_2nd | e3cvzB2 | A: beta complex topology | X: Mainly beta domain in low-molecular-weight S-layer protein (From Topology) | H: Mainly beta domain in low-molecular-weight S-layer protein (From Topology) | T: Mainly beta domain in low-molecular-weight S-layer protein | F: LMWSLP_N_2nd | ECOD (1.6) |
B | LMWSLP_N_1st | e3cvzB1 | A: a+b two layers | X: Reverse ferredoxin | H: a+b domain in low-molecular-weight S-layer protein (From Topology) | T: a+b domain in low-molecular-weight S-layer protein | F: LMWSLP_N_1st | ECOD (1.6) |
C | LMWSLP_N_2nd | e3cvzC2 | A: beta complex topology | X: Mainly beta domain in low-molecular-weight S-layer protein (From Topology) | H: Mainly beta domain in low-molecular-weight S-layer protein (From Topology) | T: Mainly beta domain in low-molecular-weight S-layer protein | F: LMWSLP_N_2nd | ECOD (1.6) |
C | LMWSLP_N_1st | e3cvzC1 | A: a+b two layers | X: Reverse ferredoxin | H: a+b domain in low-molecular-weight S-layer protein (From Topology) | T: a+b domain in low-molecular-weight S-layer protein | F: LMWSLP_N_1st | ECOD (1.6) |
D | LMWSLP_N_2nd | e3cvzD2 | A: beta complex topology | X: Mainly beta domain in low-molecular-weight S-layer protein (From Topology) | H: Mainly beta domain in low-molecular-weight S-layer protein (From Topology) | T: Mainly beta domain in low-molecular-weight S-layer protein | F: LMWSLP_N_2nd | ECOD (1.6) |
D | LMWSLP_N_1st | e3cvzD1 | A: a+b two layers | X: Reverse ferredoxin | H: a+b domain in low-molecular-weight S-layer protein (From Topology) | T: a+b domain in low-molecular-weight S-layer protein | F: LMWSLP_N_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.1490.290 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
B | 3.30.1490.290 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
C | 3.30.1490.290 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
D | 3.30.1490.290 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12211 | Low molecular weight S layer protein N terminal (LMWSLP_N) | Low molecular weight S layer protein N terminal | This family of proteins is found in bacteria. Proteins in this family are typically between 328 and 381 amino acids in length. There is a conserved LGDG sequence motif. Clostridial species have a layer of surface proteins surrounding their membrane. ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
S-layer protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR051922 | Bacterial Sporulation-Associated | Family | |
IPR007253 | Cell wall binding repeat 2 | Repeat | |
IPR043090 | Low molecular weight S layer protein, N-terminal, subdomain | Homologous Superfamily | |
IPR021071 | Low molecular weight S layer protein, N-terminal | Domain |