3CKD
Crystal structure of the C-terminal domain of the Shigella type III effector IpaH
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Novel E3 ligase (NEL), C-terminal domain -like | 8052845 | 3002145 | SCOP2B (2022-06-29) |
B | SCOP2 Family | Novel E3 ligase (NEL), C-terminal domain-like | 8050055 | 4006749 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Novel E3 ligase (NEL), C-terminal domain -like | 8052845 | 3002145 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | Novel E3 ligase (NEL), C-terminal domain -like | 8052845 | 3002145 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | NEL | e3ckdA1 | A: alpha arrays | X: Novel E3 ligase (NEL) (From Topology) | H: Novel E3 ligase (NEL) (From Topology) | T: Novel E3 ligase (NEL) | F: NEL | ECOD (1.6) |
B | NEL | e3ckdB2 | A: alpha arrays | X: Novel E3 ligase (NEL) (From Topology) | H: Novel E3 ligase (NEL) (From Topology) | T: Novel E3 ligase (NEL) | F: NEL | ECOD (1.6) |
C | NEL | e3ckdC1 | A: alpha arrays | X: Novel E3 ligase (NEL) (From Topology) | H: Novel E3 ligase (NEL) (From Topology) | T: Novel E3 ligase (NEL) | F: NEL | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.1270.130 | Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak | Chain:A | CATH (4.3.0) |
A | 1.20.58.360 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
A | 1.20.58.90 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
B | 1.20.1270.130 | Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak | Chain:A | CATH (4.3.0) |
B | 1.20.58.360 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
B | 1.20.58.90 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
C | 1.20.1270.130 | Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak | Chain:A | CATH (4.3.0) |
C | 1.20.58.360 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
C | 1.20.58.90 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14496 | C-terminal novel E3 ligase, LRR-interacting (NEL) | C-terminal novel E3 ligase, LRR-interacting | This NEL or novel E3 ligase domain is found at the C-terminus of bacterial virulence factors. Its sequence is different from those of the eukaryotic HECT and RING-finger E3 ligases, and it subverts the host ubiquitination process. At the N-terminus o ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Invasion plasmid antigen, secreted by the Mxi-Spa secretion machinery |
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InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR051071 | Leucine-rich repeat-containing bacterial E3 ubiquitin ligases | Family | |
IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
IPR001611 | Leucine-rich repeat | Repeat | |
IPR032674 | LRR-containing bacterial E3 ligase, N-terminal | Domain | |
IPR029487 | Novel E3 ligase domain | Domain |