3CIH
Crystal structure of a putative alpha-rhamnosidase from Bacteroides thetaiotaomicron
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Bacterial alpha-L-rhamnosidase-like | 8046912 | 4005365 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Alpha-L-rhamnosidase C-terminal domain-like | 8046915 | 4005366 | SCOP2 (2022-06-29) |
A | SCOP2 Family | GH78 ConA-like domain-like | 8051895 | 4007572 | SCOP2 (2022-06-29) |
A | SCOP2 Family | GH78 putative rhamnosidase associated domain | 8051897 | 4007573 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Six-hairpin glycosidases | 8051893 | 3000970 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | YicI C-terminal domain-like | 8051894 | 3000267 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Concanavalin A-like lectins/glucanases | 8051896 | 3000120 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Alpha-L-rhamnosidase associated domain -like | 8051898 | 3002069 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Bac_rhamnosid_like | e3cihA2 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: Bac_rhamnosid_like | ECOD (1.6) |
A | Bac_rhamnosid_C_1 | e3cihA3 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycoside hydrolase family 127 middle domain-related (From Topology) | T: Glycoside hydrolase family 127 middle domain-related | F: Bac_rhamnosid_C_1 | ECOD (1.6) |
A | Bac_rhamnosid6H | e3cihA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: alpha/alpha toroid (From Topology) | T: alpha/alpha toroid | F: Bac_rhamnosid6H | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17389 | Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain (Bac_rhamnosid6H) | Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain | - | Repeat | |
PF21209 | Alpha-rhamnosidase-like, bacteroidetes, N-terminal (Bac_rhamnosid-like_N) | Alpha-rhamnosidase-like, bacteroidetes, N-terminal | This domain is found in a group of alpha-rhamnosidases predominantly from Bacteroidetes, including the putative alpha-rhamnosidase from Bacteroides thetaiotaomicron, whose structure shows similarity with a galactose-binding domain. | Domain | |
PF17390 | Bacterial alpha-L-rhamnosidase C-terminal domain (Bac_rhamnosid_C) | Bacterial alpha-L-rhamnosidase C-terminal domain | This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are impo ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Putative alpha-rhamnosidase | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012341 | Six-hairpin glycosidase-like superfamily | Homologous Superfamily | |
IPR035398 | Alpha-L-rhamnosidase C-terminal domain | Domain | |
IPR035396 | Alpha-L-rhamnosidase, six-hairpin glycosidase domain | Domain | |
IPR008928 | Six-hairpin glycosidase superfamily | Homologous Superfamily | |
IPR048932 | Alpha-rhamnosidase-like, N-terminal domain, bacteroidetes | Domain |