Annotations: 3B4S

Crystal structure of a LuxT domain from Vibrio parahaemolyticus RIMD 2210633

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Pyr_redox_2	e3b4sH1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: Pyr_redox_2	ECOD (v294.2)
G	Pyr_redox_2	e3b4sG1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: Pyr_redox_2	ECOD (v294.2)
F	Pyr_redox_2	e3b4sF1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: Pyr_redox_2	ECOD (v294.2)
E	Pyr_redox_2	e3b4sE1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: Pyr_redox_2	ECOD (v294.2)
D	Pyr_redox_2	e3b4sD1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: Pyr_redox_2	ECOD (v294.2)
C	Pyr_redox_2	e3b4sC1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: Pyr_redox_2	ECOD (v294.2)
B	Pyr_redox_2	e3b4sB1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: Pyr_redox_2	ECOD (v294.2)
A	Pyr_redox_2	e3b4sA1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: Pyr_redox_2	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	1.10.287.790	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	luxt domain from vibrio parahaemolyticus	CATH (4.3.0)
H	1.20.5.830	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	luxt domain from vibrio parahaemolyticus	CATH (4.3.0)
G	1.10.287.790	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	luxt domain from vibrio parahaemolyticus	CATH (4.3.0)
G	1.20.5.830	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	luxt domain from vibrio parahaemolyticus	CATH (4.3.0)
F	1.10.287.790	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	luxt domain from vibrio parahaemolyticus	CATH (4.3.0)
F	1.20.5.830	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	luxt domain from vibrio parahaemolyticus	CATH (4.3.0)
E	1.10.287.790	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	luxt domain from vibrio parahaemolyticus	CATH (4.3.0)
E	1.20.5.830	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	luxt domain from vibrio parahaemolyticus	CATH (4.3.0)
D	1.10.287.790	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	luxt domain from vibrio parahaemolyticus	CATH (4.3.0)
D	1.20.5.830	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	luxt domain from vibrio parahaemolyticus	CATH (4.3.0)
C	1.10.287.790	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	luxt domain from vibrio parahaemolyticus	CATH (4.3.0)
C	1.20.5.830	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	luxt domain from vibrio parahaemolyticus	CATH (4.3.0)
B	1.10.287.790	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	luxt domain from vibrio parahaemolyticus	CATH (4.3.0)
B	1.20.5.830	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	luxt domain from vibrio parahaemolyticus	CATH (4.3.0)
A	1.10.287.790	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	luxt domain from vibrio parahaemolyticus	CATH (4.3.0)
A	1.20.5.830	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	luxt domain from vibrio parahaemolyticus	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Protein LuxT	DNA binding binding nucleic acid binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001647	DNA-binding HTH domain, TetR-type	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

3B4S | pdb_00003b4s

Crystal structure of a LuxT domain from Vibrio parahaemolyticus RIMD 2210633

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage