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 3B4Q | pdb_00003b4q

Crystal structure of a conserved protein domain (unknown function) from Corynebacterium diphtheriae

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyDIP0775 C-terminal domain-like 8102987 3002776 SCOP2B (2022-06-29)
ASCOP2 FamilyDIP0775 C-terminal domain-like 8046674 4005233 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyDIP0775 C-terminal domain-like 8102987 3002776 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRpf1_Ce3b4qB1 A: alpha arraysX: HTHH: HTHT: tetra-helical, lambda repressor-likeF: Rpf1_CECOD (v295.2)
ARpf1_Ce3b4qA1 A: alpha arraysX: Tetracyclin repressor-like, C-terminal domainH: Slp2a Rab-binding domain-likeT: Slp2a Rab-binding domain-likeF: Rpf1_CECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B1.10.1200.100 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein Chain ACATH (4.3.0)
A1.10.1200.100 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein Chain ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF11574Resuscitation-promoting factor Rpf1, C-terminal (Rpf1_C)Resuscitation-promoting factor Rpf1, C-terminalThis is the C-terminal domain of Resuscitation-promoting factor Rpf1 from Corynebacterium glutamicum [1], which is adjacent the RPF domain (Pfam:PF06737). The function of this domain is not yet known. Rpf1 has peptidoglycan hydrolytic activity and st ...This is the C-terminal domain of Resuscitation-promoting factor Rpf1 from Corynebacterium glutamicum [1], which is adjacent the RPF domain (Pfam:PF06737). The function of this domain is not yet known. Rpf1 has peptidoglycan hydrolytic activity and stimulates resuscitation of dormant cells [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Uncharacterized protein - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR021630Resuscitation-promoting factor Rpf1, C-terminalDomain
A, B
IPR010618Resuscitation-promoting factor, core lysozyme-like domainDomain
A, B
IPR044905Resuscitation-promoting factor Rpf1, C-terminal superfamilyHomologous Superfamily
A, B
IPR023346Lysozyme-like domain superfamilyHomologous Superfamily