3AXA
Crystal structure of afadin PDZ domain in complex with the C-terminal peptide from nectin-3
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d3axab_ | All beta proteins | PDZ domain-like | PDZ domain-like | PDZ domain | automated matches | mouse, mouse (Mus musculus ) [TaxId: 10090 ], mouse, mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
A | d3axaa_ | All beta proteins | PDZ domain-like | PDZ domain-like | PDZ domain | automated matches | mouse, mouse (Mus musculus ) [TaxId: 10090 ], mouse, mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PDZ | e3axaB1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ | ECOD (1.6) |
A | PDZ | e3axaA1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
A | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00595 | PDZ domain (PDZ) | PDZ domain | PDZ domains are found in diverse signaling proteins. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002710 | Dilute domain | Domain | |
IPR028842 | Afadin | Family | |
IPR000159 | Ras-associating domain | Domain | |
IPR008984 | SMAD/FHA domain superfamily | Homologous Superfamily | |
IPR000253 | Forkhead-associated (FHA) domain | Domain | |
IPR036034 | PDZ superfamily | Homologous Superfamily | |
IPR037977 | Afadin, cargo binding domain | Domain | |
IPR001478 | PDZ domain | Domain | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR051427 | Nectin and Nectin-like | Family | |
IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily | |
IPR033319 | Nectin-3, immunoglobulin variable domain 1 | Domain | |
IPR013106 | Immunoglobulin V-set domain | Domain | |
IPR003599 | Immunoglobulin domain subtype | Domain | |
IPR033320 | Nectin-3/4, second Ig domain | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR013162 | CD80-like, immunoglobulin C2-set | Domain | |
IPR007110 | Immunoglobulin-like domain | Domain |