3AV6
Crystal structure of mouse DNA methyltransferase 1 with AdoMet
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | BAH domain | 8053026 | 3001462 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | BAH domain | 8053027 | 3001462 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8053025 | 3000118 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF12047 | e3av6A2 | A: beta barrels | X: Replication foci-targeting sequence N-terminal domain (From Topology) | H: Replication foci-targeting sequence N-terminal domain (From Topology) | T: Replication foci-targeting sequence N-terminal domain | F: PF12047 | ECOD (1.6) |
A | PF01426 | e3av6A4 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01426 | ECOD (1.6) |
A | PF12047 | e3av6A5 | A: alpha arrays | X: HTH | H: Replication foci-targeting sequence C-terminal domain (From Topology) | T: Replication foci-targeting sequence C-terminal domain | F: PF12047 | ECOD (1.6) |
A | PF00145 | e3av6A6 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF00145 | ECOD (1.6) |
A | F_UNCLASSIFIED | e3av6A8 | A: few secondary structure elements | X: CXXC domain-like | H: CXXC domain (From Topology) | T: CXXC domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e3av6A7 | A: few secondary structure elements | X: CXXC domain-like | H: C-terminal Zn-binding domain in DNA (cytosine-5)-methyltransferase 1 (From Topology) | T: C-terminal Zn-binding domain in DNA (cytosine-5)-methyltransferase 1 | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01426 | BAH domain (BAH) | BAH domain | This domain has been called BAH (Bromo adjacent homology) domain and has also been called ELM1 and BAM (Bromo adjacent motif) domain. The function of this domain is unknown but may be involved in protein-protein interaction [3]. | Domain | |
PF12047 | Cytosine specific DNA methyltransferase replication foci domain (DNMT1-RFD) | Cytosine specific DNA methyltransferase replication foci domain | This domain is part of a cytosine specific DNA methyltransferase enzyme. It functions non-catalytically to target the protein towards replication foci. This allows the DNMT1 protein to methylate the correct residues. This domain targets DMAP1 and HDA ... | Domain | |
PF00145 | C-5 cytosine-specific DNA methylase (DNA_methylase) | C-5 cytosine-specific DNA methylase | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001025 | Bromo adjacent homology (BAH) domain | Domain | |
IPR018117 | DNA methylase, C-5 cytosine-specific, active site | Active Site | |
IPR022702 | DNA (cytosine-5)-methyltransferase 1, replication foci domain | Domain | |
IPR031303 | DNA methylase, C-5 cytosine-specific, conserved site | Conserved Site | |
IPR017198 | DNA (cytosine-5)-methyltransferase 1-like | Family | |
IPR010506 | DMAP1-binding domain | Domain | |
IPR043151 | Bromo adjacent homology (BAH) domain superfamily | Homologous Superfamily | |
IPR001525 | C-5 cytosine methyltransferase | Family | |
IPR002857 | Zinc finger, CXXC-type | Domain | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR050390 | DNA Cytosine-5 Methyltransferase | Family |