High-resolution structure of DHDPS from Clostridium botulinum in complex with pyruvate
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d3a5fb_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I aldolase | Dihydrodipicolinate synthase | (Clostridium botulinum A str. ATCC 19397 ) [TaxId: 441770 ], | SCOPe (2.08) |
| A | d3a5fa_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I aldolase | Dihydrodipicolinate synthase | (Clostridium botulinum A str. ATCC 19397 ) [TaxId: 441770 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Cytochrome_CBB3 | e3a5fB1 | A: alpha arrays | X: Alpha-beta plaits | H: Phage tail protein-like | T: Transmembrane protein 14A | F: Cytochrome_CBB3 | ECOD (v295.2) |
| A | Chitin_bind_1 | e3a5fA1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: Chitin_bind_1 | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (4.3.0) |
| A | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00701 | Dihydrodipicolinate synthetase family (DHDPS) | Dihydrodipicolinate synthetase family | This family has a TIM barrel structure. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Dihydrodipicolinate synthase | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR020624 | Schiff base-forming aldolase, conserved site | Conserved Site | |
| IPR005263 | 4-hydroxy-tetrahydrodipicolinate synthase, DapA | Family | |
| IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily | |
| IPR020625 | Schiff base-forming aldolase, active site | Active Site | |
| IPR002220 | DapA-like | Family |