Annotations: 2YH6

Structure of the N-terminal domain of BamC from E. coli

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Flpp3/BamC-like	8104065	3002816	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Flpp3/BamC-like	8104065	3002816	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Flpp3/BamC-like	8104065	3002816	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Flpp3/BamC-like	8104065	3002816	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	HSCB_C	e2yh6B2	A: beta barrels	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: HSCB_C	ECOD (v294.2)
C	HSCB_C	e2yh6C2	A: beta barrels	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: HSCB_C	ECOD (v294.2)
D	SH3_1	e2yh6D2	A: beta barrels	X: Fusion glycoprotein F2	H: HTH	T: winged helix domain	F: SH3_1	ECOD (v294.2)
A	HSCB_C	e2yh6A2	A: beta barrels	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: HSCB_C	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.530.50	Alpha Beta	2-Layer Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 4	CATH (4.3.0)
C	3.30.530.50	Alpha Beta	2-Layer Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 4	CATH (4.3.0)
D	3.30.530.50	Alpha Beta	2-Layer Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 4	CATH (4.3.0)
A	3.30.530.50	Alpha Beta	2-Layer Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 4	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF06804	Outer membrane protein assembly factor BamC-like C-terminal domain (BamC_C)	Outer membrane protein assembly factor BamC-like C-terminal domain	This entry represents the C-terminal domain of BamC and related sequences. BamC is part of the outer membrane protein assembly Bam complex (composed of the outer membrane protein BamA, and four lipoproteins BamB, BamC, BamD and BamE), which is involv ...	This entry represents the C-terminal domain of BamC and related sequences. BamC is part of the outer membrane protein assembly Bam complex (composed of the outer membrane protein BamA, and four lipoproteins BamB, BamC, BamD and BamE), which is involved in assembly and insertion of beta-barrel proteins into the outer membrane [1-5]. E. coli BamC is a nonessential member of the Bam complex that stabilises the interaction between the essential proteins BamA and BamD [6]. This entry also includes NMB0928 from Neisseria meningitidis whose function is unknown.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	LIPOPROTEIN 34	identical protein binding protein binding binding	membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane establishment of localization localization macromolecule localization intracellular protein localization protein insertion into membrane	cell surface cellular anatomical structure membrane protein-containing complex extracellular region periplasmic side of cell outer membrane membrane protein complex side of membrane Bam protein complex cell outer membrane external encapsulating structure cell envelope extracellular protein-containing complex outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR010653	Outer membrane protein assembly factor BamC-like	Domain
A, B, C, D	IPR042268	Outer membrane protein assembly factor BamC, C-terminal	Homologous Superfamily
A, B, C, D	IPR014524	Outer membrane protein assembly factor BamC	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Omp85-TpsB Outer Membrane Transporter Superfamily	BamC component of the Bam β-barrel assembly machine

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