2VO9
CRYSTAL STRUCTURE OF THE ENZYMATICALLY ACTIVE DOMAIN OF THE LISTERIA MONOCYTOGENES BACTERIOPHAGE 500 ENDOLYSIN PLY500
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2vo9a1 | Alpha and beta proteins (a+b) | Hedgehog/DD-peptidase | Hedgehog/DD-peptidase | VanY-like | L-alanyl-D-glutamate peptidase Ply | (Listeria phage A500 ) [TaxId: 40522 ], | SCOPe (2.08) |
A | d2vo9a2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Listeria phage A500 ) [TaxId: 40522 ], | SCOPe (2.08) |
B | d2vo9b2 | Alpha and beta proteins (a+b) | Hedgehog/DD-peptidase | Hedgehog/DD-peptidase | VanY-like | automated matches | (Listeria phage A500 ) [TaxId: 40522 ], | SCOPe (2.08) |
B | d2vo9b3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Listeria phage A500 ) [TaxId: 40522 ], | SCOPe (2.08) |
C | d2vo9c2 | Alpha and beta proteins (a+b) | Hedgehog/DD-peptidase | Hedgehog/DD-peptidase | VanY-like | automated matches | (Listeria phage A500 ) [TaxId: 40522 ], | SCOPe (2.08) |
C | d2vo9c3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Listeria phage A500 ) [TaxId: 40522 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | VanY-like | 8025249 | 4002064 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | Hedgehog/DD-peptidase | 8037628 | 3001458 | SCOP2 (2021-05-27) |
B | SCOP2B Superfamily | Hedgehog/DD-peptidase | 8037628 | 3001458 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Hedgehog/DD-peptidase | 8037628 | 3001458 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF13539 | e2vo9A1 | A: a+b two layers | X: Hedgehog/DD-peptidase (From Topology) | H: Hedgehog/DD-peptidase (From Topology) | T: Hedgehog/DD-peptidase | F: PF13539 | ECOD (1.6) |
B | PF13539 | e2vo9B1 | A: a+b two layers | X: Hedgehog/DD-peptidase (From Topology) | H: Hedgehog/DD-peptidase (From Topology) | T: Hedgehog/DD-peptidase | F: PF13539 | ECOD (1.6) |
C | PF13539 | e2vo9C1 | A: a+b two layers | X: Hedgehog/DD-peptidase (From Topology) | H: Hedgehog/DD-peptidase (From Topology) | T: Hedgehog/DD-peptidase | F: PF13539 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.1380.10 | Alpha Beta | 2-Layer Sandwich | Muramoyl-pentapeptide Carboxypeptidase | domain 2 | CATH (4.3.0) |
B | 3.30.1380.10 | Alpha Beta | 2-Layer Sandwich | Muramoyl-pentapeptide Carboxypeptidase | domain 2 | CATH (4.3.0) |
C | 3.30.1380.10 | Alpha Beta | 2-Layer Sandwich | Muramoyl-pentapeptide Carboxypeptidase | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13539 | D-alanyl-D-alanine carboxypeptidase (Peptidase_M15_4) | D-alanyl-D-alanine carboxypeptidase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
L-ALANYL-D-GLUTAMATE PEPTIDASE |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009045 | Hedgehog signalling/DD-peptidase zinc-binding domain superfamily | Homologous Superfamily | |
IPR039561 | Peptidase M15C | Domain | |
IPR041341 | PSA endolysin, cell wall binding domain | Domain |