2V2F
Crystal structure of PBP1a from drug-resistant strain 5204 from Streptococcus pneumoniae
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth F] | d2v2ff_ | Multi-domain proteins (alpha and beta) | beta-lactamase/transpeptidase-like | beta-lactamase/transpeptidase-like | beta-Lactamase/D-ala carboxypeptidase | automated matches | (Streptococcus pneumoniae ) [TaxId: 1313 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth F] | SCOP2 Family | beta-Lactamase/D-ala carboxypeptidase | 8087190 | 4002685 | SCOP2 (2022-06-29) |
B [auth F] | SCOP2 Superfamily | beta-lactamase/transpeptidase-like | 8087191 | 3001604 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth F] | Transpeptidase_1st_1 | e2v2fF3 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Transpeptidase_1st_1 | ECOD (1.6) |
B [auth F] | Transpeptidase_2nd | e2v2fF2 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Transpeptidase_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth F] | 3.40.710.10 | Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth F] | PF00905 | Penicillin binding protein transpeptidase domain (Transpeptidase) | Penicillin binding protein transpeptidase domain | The active site serine (residue 337 in Swiss:P14677) is conserved in all members of this family. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001264 | Glycosyl transferase, family 51 | Domain | |
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR036950 | Penicillin binding protein transglycosylase domain | Homologous Superfamily | |
IPR001460 | Penicillin-binding protein, transpeptidase | Domain | |
IPR050396 | Glycosyltransferase 51/Transpeptidase | Family | |
IPR023346 | Lysozyme-like domain superfamily | Homologous Superfamily | |
B [auth F] | IPR001264 | Glycosyl transferase, family 51 | Domain |
B [auth F] | IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily |
B [auth F] | IPR036950 | Penicillin binding protein transglycosylase domain | Homologous Superfamily |
B [auth F] | IPR001460 | Penicillin-binding protein, transpeptidase | Domain |
B [auth F] | IPR050396 | Glycosyltransferase 51/Transpeptidase | Family |
B [auth F] | IPR023346 | Lysozyme-like domain superfamily | Homologous Superfamily |