2QFI
Structure of the zinc transporter YiiP
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Cation efflux protein cytoplasmic domain-like | 8035908 | 3000470 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Cation efflux protein transmembrane domain-like | 8035909 | 3001720 | SCOP2B (2021-05-27) |
A | SCOP2 Family | Cation efflux protein transmembrane domain-like | 8023529 | 4002765 | SCOP2 (2021-05-27) |
A | SCOP2 Family | Cation efflux protein cytoplasmic domain-like | 8023528 | 4001860 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | Cation efflux protein transmembrane domain-like | 8035909 | 3001720 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | Cation efflux protein cytoplasmic domain-like | 8035908 | 3000470 | SCOP2 (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PF01545 | e2qfiB1 | A: alpha bundles | X: Cation efflux protein transmembrane domain-like (From Topology) | H: Cation efflux protein transmembrane domain-like (From Topology) | T: Cation efflux protein transmembrane domain-like | F: PF01545 | ECOD (1.6) |
B | PF16916 | e2qfiB2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: Cation efflux protein cytoplasmic domain-like (From Topology) | T: Cation efflux protein cytoplasmic domain-like | F: PF16916 | ECOD (1.6) |
A | PF01545 | e2qfiA1 | A: alpha bundles | X: Cation efflux protein transmembrane domain-like (From Topology) | H: Cation efflux protein transmembrane domain-like (From Topology) | T: Cation efflux protein transmembrane domain-like | F: PF01545 | ECOD (1.6) |
A | PF16916 | e2qfiA2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: Cation efflux protein cytoplasmic domain-like (From Topology) | T: Cation efflux protein cytoplasmic domain-like | F: PF16916 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 1.20.1510.10 | Mainly Alpha | Up-down Bundle | Alpha-lytic protease prodomain-like | Cation efflux protein transmembrane domain | CATH (4.3.0) |
B | 3.30.70.1350 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Cation efflux protein, cytoplasmic domain | CATH (4.3.0) |
A | 1.20.1510.10 | Mainly Alpha | Up-down Bundle | Alpha-lytic protease prodomain-like | Cation efflux protein transmembrane domain | CATH (4.3.0) |
A | 3.30.70.1350 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Cation efflux protein, cytoplasmic domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16916 | Dimerisation domain of Zinc Transporter (ZT_dimer) | Dimerisation domain of Zinc Transporter | ZT_dimer is the dimerisation region of the whole molecule of zinc transporters since the full-length members form a homodimer during activity. The domain lies within the cytoplasm and exhibits an overall structural similarity with the copper metalloc ... | Domain | |
PF01545 | Cation efflux family (Cation_efflux) | Cation efflux family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR027470 | Cation efflux protein, cytoplasmic domain | Domain | |
IPR002524 | Cation efflux protein | Family | |
IPR023783 | Cation efflux pump FieF | Family | |
IPR036837 | Cation efflux protein, cytoplasmic domain superfamily | Homologous Superfamily | |
IPR027469 | Cation efflux transmembrane domain superfamily | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Cation diffusion facilitator | Bacterial zinc transporters |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |