2PJW
The Vps27/Hse1 complex is a GAT domain-based scaffold for ubiquitin-dependent sorting
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth H] | KOG2199_1 | e2pjwH1 | A: alpha bundles | X: Spectrin repeat-like | H: GAT-like domain (From Topology) | T: GAT-like domain | F: KOG2199_1 | ECOD (1.6) |
B [auth V] | KOG1818 | e2pjwV1 | A: alpha bundles | X: Spectrin repeat-like | H: GAT-like domain (From Topology) | T: GAT-like domain | F: KOG1818 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth H] | 1.20.5.1940 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
B [auth V] | 1.20.5.1940 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth V] | PF21356 | Vacuolar protein sorting-associated protein 27, GAT-like domain (Vps27_GAT-like) | Vacuolar protein sorting-associated protein 27, GAT-like domain | This domain is found in Vacuolar protein sorting-associated protein 27 from Saccharomyces cerevisiae (Vps27) and similar sequences predominantly found in yeast. Vps27 binds to ubiquitinated transmembrane proteins and recruits both ubiquitin ligases a ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth H] | IPR002014 | VHS domain | Domain |
A [auth H] | IPR008942 | ENTH/VHS | Homologous Superfamily |
A [auth H] | IPR050670 | Signal Transducing Adapter Molecule | Family |
A [auth H] | IPR001452 | SH3 domain | Domain |
A [auth H] | IPR036028 | SH3-like domain superfamily | Homologous Superfamily |
A [auth H] | IPR003903 | Ubiquitin interacting motif | Conserved Site |
B [auth V] | IPR002014 | VHS domain | Domain |
B [auth V] | IPR008942 | ENTH/VHS | Homologous Superfamily |
B [auth V] | IPR017455 | Zinc finger, FYVE-related | Domain |
B [auth V] | IPR000306 | FYVE zinc finger | Domain |
B [auth V] | IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily |
B [auth V] | IPR017073 | Hepatocyte growth factor-regulated tyrosine kinase substrate/VPS27 | Family |
B [auth V] | IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
B [auth V] | IPR003903 | Ubiquitin interacting motif | Conserved Site |
B [auth V] | IPR049425 | Vacuolar protein sorting-associated protein 27, GAT-like domain | Domain |