2OGR

Crystal Structure of Yellow Fluorescent Protein from Zoanthus sp. at 1.8 A Resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2ogra_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Zoanthus sp. ) [TaxId: 105402 ],	SCOPe (2.08)
B	d2ogrb_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Zoanthus sp. ) [TaxId: 105402 ],	SCOPe (2.08)
C	d2ogrc_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Zoanthus sp. ) [TaxId: 105402 ],	SCOPe (2.08)
D	d2ogrd_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Zoanthus sp. ) [TaxId: 105402 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Fluorescent proteins	8081052	4001049	SCOP2 (2021-05-27)
A	SCOP2 Superfamily	GFP-like	8081053	3000576	SCOP2 (2021-05-27)
B	SCOP2B Superfamily	GFP-like	8081053	3000576	SCOP2B (2021-05-27)
C	SCOP2B Superfamily	GFP-like	8081053	3000576	SCOP2B (2021-05-27)
D	SCOP2B Superfamily	GFP-like	8081053	3000576	SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF01353	e2ogrA1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: PF01353	ECOD (1.6)
B	PF01353	e2ogrB1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: PF01353	ECOD (1.6)
C	PF01353	e2ogrC1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: PF01353	ECOD (1.6)
D	PF01353	e2ogrD1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: PF01353	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
B	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
C	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
D	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01353	Green fluorescent protein (GFP)	Green fluorescent protein	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	FLUORESCENT PROTEIN FP538	-	bioluminescence cellular metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR011584	Green fluorescent protein-related	Family
A, B, C, D	IPR009017	Green fluorescent protein	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D	CH7	Parent Component: LYS, TYR, GLY RESID: AA0382 PSI-MOD : 2-tetrahydropyridinyl-5-imidazolinone glycine MOD:00387
A, B, C, D	NFA	Parent Component: PHE RESID: AA0382 , AA0094 PSI-MOD : 2-tetrahydropyridinyl-5-imidazolinone glycine MOD:00387 , L-phenylalanine amide MOD:00103

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.