2OGR
Crystal Structure of Yellow Fluorescent Protein from Zoanthus sp. at 1.8 A Resolution
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2ogra_ | Alpha and beta proteins (a+b) | GFP-like | GFP-like | automated matches | automated matches | (Zoanthus sp. ) [TaxId: 105402 ], | SCOPe (2.08) |
B | d2ogrb_ | Alpha and beta proteins (a+b) | GFP-like | GFP-like | automated matches | automated matches | (Zoanthus sp. ) [TaxId: 105402 ], | SCOPe (2.08) |
C | d2ogrc_ | Alpha and beta proteins (a+b) | GFP-like | GFP-like | automated matches | automated matches | (Zoanthus sp. ) [TaxId: 105402 ], | SCOPe (2.08) |
D | d2ogrd_ | Alpha and beta proteins (a+b) | GFP-like | GFP-like | automated matches | automated matches | (Zoanthus sp. ) [TaxId: 105402 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Fluorescent proteins | 8081052 | 4001049 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | GFP-like | 8081053 | 3000576 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | GFP-like | 8081053 | 3000576 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | GFP-like | 8081053 | 3000576 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | GFP-like | 8081053 | 3000576 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01353 | e2ogrA1 | A: beta barrels | X: GFP-like (From Topology) | H: GFP-like (From Topology) | T: GFP-like | F: PF01353 | ECOD (1.6) |
B | PF01353 | e2ogrB1 | A: beta barrels | X: GFP-like (From Topology) | H: GFP-like (From Topology) | T: GFP-like | F: PF01353 | ECOD (1.6) |
C | PF01353 | e2ogrC1 | A: beta barrels | X: GFP-like (From Topology) | H: GFP-like (From Topology) | T: GFP-like | F: PF01353 | ECOD (1.6) |
D | PF01353 | e2ogrD1 | A: beta barrels | X: GFP-like (From Topology) | H: GFP-like (From Topology) | T: GFP-like | F: PF01353 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.155.10 | Mainly Beta | Beta Barrel | Green Fluorescent Protein | Green fluorescent protein | CATH (4.3.0) |
B | 2.40.155.10 | Mainly Beta | Beta Barrel | Green Fluorescent Protein | Green fluorescent protein | CATH (4.3.0) |
C | 2.40.155.10 | Mainly Beta | Beta Barrel | Green Fluorescent Protein | Green fluorescent protein | CATH (4.3.0) |
D | 2.40.155.10 | Mainly Beta | Beta Barrel | Green Fluorescent Protein | Green fluorescent protein | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
FLUORESCENT PROTEIN FP538 | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
CH7 | Parent Component: LYS, TYR, GLY :  AA0382 :  2-tetrahydropyridinyl-5-imidazolinone glycine MOD:00387 | |
NFA | Parent Component: PHE :  AA0382 , AA0094 :  2-tetrahydropyridinyl-5-imidazolinone glycine MOD:00387 , L-phenylalanine amide MOD:00103 |