2NWA

X-ray Crystal Structure of Protein ytmB from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR466

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2nwaa1	All beta proteins	PUA domain-like	PUA domain-like	YtmB-like	Hypothetical protein YtmB	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
A	d2nwaa2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
B	d2nwab2	All beta proteins	PUA domain-like	PUA domain-like	YtmB-like	Hypothetical protein YtmB	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
B	d2nwab3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
C	d2nwac2	All beta proteins	PUA domain-like	PUA domain-like	YtmB-like	Hypothetical protein YtmB	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
C	d2nwac3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
D	d2nwad2	All beta proteins	PUA domain-like	PUA domain-like	YtmB-like	Hypothetical protein YtmB	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
D	d2nwad3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
E	d2nwae2	All beta proteins	PUA domain-like	PUA domain-like	YtmB-like	Hypothetical protein YtmB	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
E	d2nwae3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
F	d2nwaf2	All beta proteins	PUA domain-like	PUA domain-like	YtmB-like	Hypothetical protein YtmB	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
F	d2nwaf3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
G	d2nwag2	All beta proteins	PUA domain-like	PUA domain-like	YtmB-like	Hypothetical protein YtmB	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
G	d2nwag3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
H	d2nwah2	All beta proteins	PUA domain-like	PUA domain-like	YtmB-like	Hypothetical protein YtmB	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
H	d2nwah3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YtmB-like	8022528	4002002	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PUA domain-like	8034908	3001015	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	PUA domain-like	8034908	3001015	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PUA domain-like	8034908	3001015	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PUA domain-like	8034908	3001015	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	PUA domain-like	8034908	3001015	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	PUA domain-like	8034908	3001015	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	PUA domain-like	8034908	3001015	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	PUA domain-like	8034908	3001015	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF2584	e2nwaA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: DUF2584	ECOD (1.6)
B	DUF2584	e2nwaB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: DUF2584	ECOD (1.6)
C	DUF2584	e2nwaC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: DUF2584	ECOD (1.6)
D	DUF2584	e2nwaD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: DUF2584	ECOD (1.6)
E	DUF2584	e2nwaE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: DUF2584	ECOD (1.6)
F	DUF2584	e2nwaF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: DUF2584	ECOD (1.6)
G	DUF2584	e2nwaG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: DUF2584	ECOD (1.6)
H	DUF2584	e2nwaH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: DUF2584	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.240.20	Mainly Beta	Beta Barrel	Ribosomal Protein L25	Chain P	CATH (4.3.0)
B	2.40.240.20	Mainly Beta	Beta Barrel	Ribosomal Protein L25	Chain P	CATH (4.3.0)
C	2.40.240.20	Mainly Beta	Beta Barrel	Ribosomal Protein L25	Chain P	CATH (4.3.0)
D	2.40.240.20	Mainly Beta	Beta Barrel	Ribosomal Protein L25	Chain P	CATH (4.3.0)
E	2.40.240.20	Mainly Beta	Beta Barrel	Ribosomal Protein L25	Chain P	CATH (4.3.0)
F	2.40.240.20	Mainly Beta	Beta Barrel	Ribosomal Protein L25	Chain P	CATH (4.3.0)
G	2.40.240.20	Mainly Beta	Beta Barrel	Ribosomal Protein L25	Chain P	CATH (4.3.0)
H	2.40.240.20	Mainly Beta	Beta Barrel	Ribosomal Protein L25	Chain P	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF10763	Protein of unknown function (DUF2584) (DUF2584)	Protein of unknown function (DUF2584)	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR015947	PUA-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR019699	Protein of unknown function DUF2584	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.