2KRI
Structure of a complex between domain V of beta2-glycoprotein I and the fourth ligand-binding module from LDLR determined with Haddock
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2kria_ | Small proteins | Complement control module/SCR domain | Complement control module/SCR domain | Complement control module/SCR domain | beta2-glycoprotein I | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d2krib_ | Small proteins | LDL receptor-like module | LDL receptor-like module | LDL receptor-like module | Ligand-binding domain of low-density lipoprotein receptor | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Sushi_2 | e2kriA1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: Complement control module/SCR domain | F: Sushi_2 | ECOD (1.6) |
B | Ldl_recept_a | e2kriB1 | A: few secondary structure elements | X: EGF-like | H: LDL receptor-like module (From Topology) | T: LDL receptor-like module | F: Ldl_recept_a | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.10.70.10 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00057 | Low-density lipoprotein receptor domain class A (Ldl_recept_a) | Low-density lipoprotein receptor domain class A | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000436 | Sushi/SCR/CCP domain | Domain | |
IPR035976 | Sushi/SCR/CCP superfamily | Homologous Superfamily | |
IPR050350 | Complement & Cell Adhesion Regulators | Family | |
IPR015104 | Beta-2-glycoprotein-1 fifth domain | Domain | |
IPR018097 | EGF-like calcium-binding, conserved site | Conserved Site | |
IPR036055 | LDL receptor-like superfamily | Homologous Superfamily | |
IPR049883 | NOTCH1 EGF-like calcium-binding domain | Domain | |
IPR000033 | LDLR class B repeat | Repeat | |
IPR001881 | EGF-like calcium-binding domain | Domain | |
IPR023415 | Low-density lipoprotein (LDL) receptor class A, conserved site | Conserved Site | |
IPR011042 | Six-bladed beta-propeller, TolB-like | Homologous Superfamily | |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | Repeat | |
IPR050685 | Low-density lipoprotein receptor | Family | |
IPR000742 | EGF-like domain | Domain | |
IPR009030 | Growth factor receptor cysteine-rich domain superfamily | Homologous Superfamily | |
IPR000152 | EGF-type aspartate/asparagine hydroxylation site | PTM |