2IYB

Structure of complex between the 3rd LIM domain of TES and the EVH1 domain of Mena

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2iyba2	All beta proteins	PH domain-like barrel	PH domain-like	Enabled/VASP homology 1 domain (EVH1 domain)	Enabled	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2iyba3	Artifacts	Tags	Tags	Tags	N-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2iybb_	All beta proteins	PH domain-like barrel	PH domain-like	Enabled/VASP homology 1 domain (EVH1 domain)	Enabled	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d2iybc_	All beta proteins	PH domain-like barrel	PH domain-like	Enabled/VASP homology 1 domain (EVH1 domain)	Enabled	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d2iybd_	All beta proteins	PH domain-like barrel	PH domain-like	Enabled/VASP homology 1 domain (EVH1 domain)	Enabled	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Enabled/VASP homology 1 domain (EVH1 domain)	8022227	4002440	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PH domain-like	8034607	3000134	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	PH domain-like	8034607	3000134	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PH domain-like	8034607	3000134	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PH domain-like	8034607	3000134	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	WH1	e2iybA1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: WH1	ECOD (1.6)
B	WH1	e2iybB1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: WH1	ECOD (1.6)
C	WH1	e2iybC1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: WH1	ECOD (1.6)
D	WH1	e2iybD1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: WH1	ECOD (1.6)
E	LIM_C_2	e2iybE4	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: LIM_C_2	ECOD (1.6)
E	LIM_N	e2iybE3	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: LIM_N	ECOD (1.6)
F	LIM_C_2	e2iybF1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: LIM_C_2	ECOD (1.6)
F	LIM_N	e2iybF2	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: LIM_N	ECOD (1.6)
G	LIM_C_2	e2iybG1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: LIM_C_2	ECOD (1.6)
G	LIM_N	e2iybG2	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: LIM_N	ECOD (1.6)
H	LIM_C_2	e2iybH1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: LIM_C_2	ECOD (1.6)
H	LIM_N	e2iybH2	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: LIM_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
B	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
C	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
D	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
E	2.10.110.10	Mainly Beta	Ribbon	Cysteine Rich Protein	Cysteine Rich Protein	CATH (4.3.0)
F	2.10.110.10	Mainly Beta	Ribbon	Cysteine Rich Protein	Cysteine Rich Protein	CATH (4.3.0)
G	2.10.110.10	Mainly Beta	Ribbon	Cysteine Rich Protein	Cysteine Rich Protein	CATH (4.3.0)
H	2.10.110.10	Mainly Beta	Ribbon	Cysteine Rich Protein	Cysteine Rich Protein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00568	WH1 domain (WH1)	WH1 domain	WASp Homology domain 1 (WH1) domain. WASP is the protein that is defective in Wiskott-Aldrich syndrome (WAS). The majority of point mutations occur within the amino- terminal WH1 domain. The metabotropic glutamate receptors mGluR1alpha and mGluR5 bi ...	WASp Homology domain 1 (WH1) domain. WASP is the protein that is defective in Wiskott-Aldrich syndrome (WAS). The majority of point mutations occur within the amino- terminal WH1 domain. The metabotropic glutamate receptors mGluR1alpha and mGluR5 bind a protein called homer, which is a WH1 domain homologue [2]. A subset of WH1 domains has been termed a "EVH1" domain [3] and appear to bind a polyproline motif.	Domain
E, F, G, H	PF00412	LIM domain (LIM)	LIM domain	This family represents two copies of the LIM structural domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	PROTEIN ENABLED HOMOLOG	SH3 domain binding protein binding binding protein domain specific binding cytoskeletal protein binding actin binding WW domain binding profilin binding	cellular process actin polymerization-dependent cell motility cell motility multicellular organismal process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cellular process actin polymerization-dependent cell motility cell motility multicellular organismal process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development cellular component organization or biogenesis system development developmental process plasma membrane bounded cell projection organization axon guidance nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron projection guidance neuron development actin polymerization or depolymerization organelle organization actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization cytoskeleton organization	cell junction cellular anatomical entity anchoring junction focal adhesion cell-substrate junction cell projection cell leading edge plasma membrane bounded cell projection lamellipodium intracellular organelle intracellular anatomical structure cytoskeleton organelle intracellular non-membrane-bounded organelle cell junction cellular anatomical entity anchoring junction focal adhesion cell-substrate junction cell projection cell leading edge plasma membrane bounded cell projection lamellipodium intracellular organelle intracellular anatomical structure cytoskeleton organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle synapse cytoplasm cytosol cell periphery plasma membrane membrane actin-based cell projection filopodium
E, F, G, H	TESTIN	cell adhesion molecule binding cadherin binding protein binding binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding RNA binding organic cyclic compound binding nucleic acid binding	negative regulation of cell population proliferation regulation of biological process cell population proliferation regulation of cellular process regulation of cell population proliferation negative regulation of cellular process biological regulation negative regulation of biological process cellular process	cell junction cellular anatomical entity anchoring junction focal adhesion cell-substrate junction intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane protein-containing complex membrane-bounded organelle intracellular organelle cell junction cellular anatomical entity anchoring junction focal adhesion cell-substrate junction intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane protein-containing complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR000697	WH1/EVH1 domain	Domain
A, B, C, D	IPR038023	VASP tetramerisation domain superfamily	Homologous Superfamily
A, B, C, D	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR014885	VASP tetramerisation	Domain
E, F, G, H	IPR034960	Testin, LIM domain 3	Domain
E, F, G, H	IPR010442	PET domain	Domain
E, F, G, H	IPR034959	Testin, LIM domain 2	Domain
E, F, G, H	IPR033724	PET testin	Domain
E, F, G, H	IPR001781	Zinc finger, LIM-type	Domain
E, F, G, H	IPR047120	Prickle/Espinas/Testin	Family
E, F, G, H	IPR034958	Testin, LIM domain 1	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q8N8S7	acute myeloid leukemia non-small cell lung carcinoma ovarian cancer subependymal giant cell astrocytoma astrocytic tumor Crohn disease glioblastoma interstitial lung disease large cell medulloblastoma malignant glioma oligodendroglioma pilocytic astrocytoma Acute Myeloid Leukemia (AML-M2) atypical teratoid rhabdoid tumor cystic fibrosis acute myeloid leukemia non-small cell lung carcinoma ovarian cancer subependymal giant cell astrocytoma astrocytic tumor Crohn disease glioblastoma interstitial lung disease large cell medulloblastoma malignant glioma oligodendroglioma pilocytic astrocytoma Acute Myeloid Leukemia (AML-M2) atypical teratoid rhabdoid tumor cystic fibrosis hereditary spastic paraplegia invasive ductal breast carcinoma lung cancer medulloblastoma osteosarcoma primitive neuroectodermal tumor breast cancer ductal breast carcinoma in situ IgA glomerulonephritis juvenile dermatomyositis malignant ependymoma
E, F, G, H	Pharos: Q9UGI8	glioblastoma giant cell glioblastoma Liver Cirrhosis, Experimental spina bifida B-cell chronic lymphocytic leukemia lung cancer medulloblastoma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor breast cancer lung carcinoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma pituitary cancer glioblastoma giant cell glioblastoma Liver Cirrhosis, Experimental spina bifida B-cell chronic lymphocytic leukemia lung cancer medulloblastoma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor breast cancer lung carcinoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma pituitary cancer psoriasis cystic fibrosis malignant colon neoplasm ovarian cancer pancreatic intraductal papillary-mucinous neoplasm plasma cell myeloma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.