2HJG
The crystal structure of the B. subtilis YphC GTPase in complex with GDP
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089823 | 3002022 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089822 | 3002022 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | EngA C-terminal domain-like | 8089825 | 3000440 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KH_dom-like | e2hjgA2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: Probable GTPase Der, C-terminal domain (From Topology) | T: Probable GTPase Der, C-terminal domain | F: KH_dom-like | ECOD (1.6) |
A | MnmE_helical_2nd | e2hjgA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 3.30.300.20 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14714 | KH-domain-like of EngA bacterial GTPase enzymes, C-terminal (KH_dom-like) | KH-domain-like of EngA bacterial GTPase enzymes, C-terminal | The KH-like domain at the C-terminus of the EngA subfamily of essential bacterial GTPases has a unique domain structure position. The two adjacent GTPase domains (GD1 and GD2), two domains of family MMR_HSR1, Pfam:PF01926, pack at either side of the ... | Domain | |
PF01926 | 50S ribosome-binding GTPase (MMR_HSR1) | 50S ribosome-binding GTPase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005225 | Small GTP-binding domain | Domain | |
IPR015946 | K homology domain-like, alpha/beta | Homologous Superfamily | |
IPR016484 | GTPase Der | Family | |
IPR032859 | GTPase Der, C-terminal KH-domain-like | Domain | |
IPR031166 | EngA-type guanine nucleotide-binding (G) domain | Domain | |
IPR006073 | GTP binding domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |