2CDO
structure of agarase carbohydrate binding module in complex with neoagarohexaose
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2cdoa_ | All beta proteins | Galactose-binding domain-like | Galactose-binding domain-like | automated matches | automated matches | (Saccharophagus degradans ) [TaxId: 86304 ], | SCOPe (2.08) |
B | d2cdob_ | All beta proteins | Galactose-binding domain-like | Galactose-binding domain-like | automated matches | automated matches | (Saccharophagus degradans ) [TaxId: 86304 ], | SCOPe (2.08) |
C | d2cdoc_ | All beta proteins | Galactose-binding domain-like | Galactose-binding domain-like | automated matches | automated matches | (Saccharophagus degradans ) [TaxId: 86304 ], | SCOPe (2.08) |
D | d2cdod_ | All beta proteins | Galactose-binding domain-like | Galactose-binding domain-like | automated matches | automated matches | (Saccharophagus degradans ) [TaxId: 86304 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CBM_6 | e2cdoA1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: CBM_6 | ECOD (1.6) |
B | CBM_6 | e2cdoB1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: CBM_6 | ECOD (1.6) |
C | CBM_6 | e2cdoC1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: CBM_6 | ECOD (1.6) |
D | CBM_6 | e2cdoD1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: CBM_6 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
B | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
C | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
D | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
BETA-AGARASE 1 | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily | |
IPR005084 | Carbohydrate binding module family 6 | Domain | |
IPR006584 | Cellulose binding, type IV | Domain | |
IPR016287 | Beta-agarase | Family | |
IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily | |
IPR000757 | Glycoside hydrolase family 16 | Domain |