2BFG
crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8032981 | 3001528 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | (Trans)glycosidases | 8032984 | 3000313 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8032981 | 3001528 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | (Trans)glycosidases | 8032984 | 3000313 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8032981 | 3001528 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8032981 | 3001528 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | (Trans)glycosidases | 8032984 | 3000313 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8032981 | 3001528 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8032981 | 3001528 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8032981 | 3001528 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | (Trans)glycosidases | 8032984 | 3000313 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8032981 | 3001528 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8032981 | 3001528 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8032981 | 3001528 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | (Trans)glycosidases | 8032984 | 3000313 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8032981 | 3001528 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | (Trans)glycosidases | 8032984 | 3000313 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8032981 | 3001528 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8032981 | 3001528 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8032981 | 3001528 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | (Trans)glycosidases | 8032984 | 3000313 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8032981 | 3001528 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | (Trans)glycosidases | 8032984 | 3000313 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8032981 | 3001528 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Glyco_hydro_39_2nd | e2bfgA1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Glyco_hydro_39_2nd | ECOD (1.6) |
A | Glyco_hydro_3 | e2bfgA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glyco_hydro_3 | ECOD (1.6) |
B | Glyco_hydro_39_2nd | e2bfgB1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Glyco_hydro_39_2nd | ECOD (1.6) |
B | Glyco_hydro_3 | e2bfgB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glyco_hydro_3 | ECOD (1.6) |
E | Glyco_hydro_39_2nd | e2bfgE1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Glyco_hydro_39_2nd | ECOD (1.6) |
E | Glyco_hydro_3 | e2bfgE2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glyco_hydro_3 | ECOD (1.6) |
F | Glyco_hydro_39_2nd | e2bfgF1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Glyco_hydro_39_2nd | ECOD (1.6) |
F | Glyco_hydro_3 | e2bfgF2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glyco_hydro_3 | ECOD (1.6) |
G | Glyco_hydro_39_2nd | e2bfgG1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Glyco_hydro_39_2nd | ECOD (1.6) |
G | Glyco_hydro_3 | e2bfgG2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glyco_hydro_3 | ECOD (1.6) |
H | Glyco_hydro_39_2nd | e2bfgH1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Glyco_hydro_39_2nd | ECOD (1.6) |
H | Glyco_hydro_3 | e2bfgH2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glyco_hydro_3 | ECOD (1.6) |
C | Glyco_hydro_39_2nd | e2bfgC1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Glyco_hydro_39_2nd | ECOD (1.6) |
C | Glyco_hydro_3 | e2bfgC2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glyco_hydro_3 | ECOD (1.6) |
D | Glyco_hydro_39_2nd | e2bfgD1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Glyco_hydro_39_2nd | ECOD (1.6) |
D | Glyco_hydro_3 | e2bfgD2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glyco_hydro_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR049166 | Glycosyl hydrolases family 39, N-terminal catalytic domain | Domain | |
IPR000514 | Glycoside hydrolase, family 39 | Family | |
IPR051923 | Glycosyl Hydrolase Family 39 | Family | |
IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
IPR049165 | Glycosyl hydrolases family 39, active site | Active Site |