2Z1D
Crystal structure of [NiFe] hydrogenase maturation protein, HypD from Thermococcus kodakaraensis
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01924 | e2z1dA3 | A: a/b three-layered sandwiches | X: Hydrogenase expression/formation protein HypD (From Topology) | H: Hydrogenase expression/formation protein HypD (From Topology) | T: Hydrogenase expression/formation protein HypD | F: PF01924 | ECOD (1.6) |
A | PF01924 | e2z1dA2 | A: few secondary structure elements | X: HypD Fe-S cluster binding domain (From Topology) | H: HypD Fe-S cluster binding domain (From Topology) | T: HypD Fe-S cluster binding domain | F: PF01924 | ECOD (1.6) |
B | PF01924 | e2z1dB3 | A: a/b three-layered sandwiches | X: Hydrogenase expression/formation protein HypD (From Topology) | H: Hydrogenase expression/formation protein HypD (From Topology) | T: Hydrogenase expression/formation protein HypD | F: PF01924 | ECOD (1.6) |
B | PF01924 | e2z1dB2 | A: few secondary structure elements | X: HypD Fe-S cluster binding domain (From Topology) | H: HypD Fe-S cluster binding domain (From Topology) | T: HypD Fe-S cluster binding domain | F: PF01924 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.11750 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HypD, alpha/beta domain 1 | CATH (4.3.0) |
A | 3.40.50.11740 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HypD, alpha/beta domain 2 | CATH (4.3.0) |
A | 6.10.20.100 | Special | Helix non-globular | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
B | 3.40.50.11750 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HypD, alpha/beta domain 1 | CATH (4.3.0) |
B | 3.40.50.11740 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HypD, alpha/beta domain 2 | CATH (4.3.0) |
B | 6.10.20.100 | Special | Helix non-globular | Arc Repressor Mutant, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01924 | Hydrogenase formation hypA family (HypD) | Hydrogenase formation hypA family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Hydrogenase expression/formation protein hypD |
| - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002780 | Hydrogenase formation HypD protein | Family | |
IPR042243 | HypD, domain 1 | Homologous Superfamily | |
IPR042244 | HypD, domain 2 | Homologous Superfamily |