2YXL
Crystal Structure of PH0851
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | NusB | e2yxlA2 | A: alpha complex topology | X: NusB-like (From Topology) | H: NusB-like (From Topology) | T: NusB-like | F: NusB | ECOD (1.6) |
A | Methyltr_RsmF_N | e2yxlA3 | A: a+b two layers | X: Alpha-beta plaits | H: NOL1/NOP2/sun N-terminal ferredoxin-like domain (From Topology) | T: NOL1/NOP2/sun N-terminal ferredoxin-like domain | F: Methyltr_RsmF_N | ECOD (1.6) |
A | Methyltr_RsmB-F_1 | e2yxlA1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltr_RsmB-F_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.940.10 | Mainly Alpha | Orthogonal Bundle | N-utilizing Substance Protein B Homolog | Chain A | CATH (4.3.0) |
A | 1.10.287.730 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | Helix hairpin bin | CATH (4.3.0) |
A | 3.30.70.1170 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Sun protein | CATH (4.3.0) |
A | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01189 | 16S rRNA methyltransferase RsmB/F (Methyltr_RsmB-F) | 16S rRNA methyltransferase RsmB/F | - | Family | |
PF22458 | Methyltr_RsmF/B-like, ferredoxin-like domain (RsmF-B_ferredox) | Methyltr_RsmF/B-like, ferredoxin-like domain | This entry represents a ferredoxin-like domain found in methyltransferases RsmB, RsmF and related sequences [1-5]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR035926 | NusB-like superfamily | Homologous Superfamily | |
IPR001678 | SAM-dependent methyltransferase RsmB-F/NOP2-type domain | Domain | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR049560 | SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic core | Domain | |
IPR023267 | RNA (C5-cytosine) methyltransferase | Family | |
IPR011023 | Nop2p | Domain |