2YW6
Structural studies of N terminal deletion mutant of Dps from Mycobacterium smegmatis
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2yw6a_ | All alpha proteins | Ferritin-like | Ferritin-like | Ferritin | Dodecameric ferritin homolog | (Mycolicibacterium smegmatis ) [TaxId: 1772 ], | SCOPe (2.08) |
B | d2yw6b_ | All alpha proteins | Ferritin-like | Ferritin-like | Ferritin | Dodecameric ferritin homolog | (Mycolicibacterium smegmatis ) [TaxId: 1772 ], | SCOPe (2.08) |
C | d2yw6c_ | All alpha proteins | Ferritin-like | Ferritin-like | Ferritin | Dodecameric ferritin homolog | (Mycolicibacterium smegmatis ) [TaxId: 1772 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Ferritin | 8025537 | 4000839 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ferritin-like | 8037916 | 3001658 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Ferritin-like | 8037916 | 3001658 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ferritin-like | 8037916 | 3001658 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ferritin_1 | e2yw6A1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin_1 | ECOD (1.6) |
B | Ferritin_1 | e2yw6B1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin_1 | ECOD (1.6) |
C | Ferritin_1 | e2yw6C1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Ferritin_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.1260.10 | Mainly Alpha | Up-down Bundle | Ferritin | Ferritin, core subunit, four-helix bundle | CATH (4.3.0) |
B | 1.20.1260.10 | Mainly Alpha | Up-down Bundle | Ferritin | Ferritin, core subunit, four-helix bundle | CATH (4.3.0) |
C | 1.20.1260.10 | Mainly Alpha | Up-down Bundle | Ferritin | Ferritin, core subunit, four-helix bundle | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00210 | Ferritin-like domain (Ferritin) | Ferritin-like domain | This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
DNA protection during starvation protein |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012347 | Ferritin-like | Homologous Superfamily | |
IPR009078 | Ferritin-like superfamily | Homologous Superfamily | |
IPR002177 | DNA-binding protein Dps | Family | |
IPR023188 | DNA-binding protein Dps, conserved site | Conserved Site | |
IPR008331 | Ferritin/DPS protein domain | Domain |