2YHB
Crystal Structure of the N. crassa QDE-2 AGO MID-PIWI Domains
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Mid domain of argonaute | 8053695 | 4004605 | SCOP2 (2022-06-29) |
A | SCOP2 Family | PIWI domain | 8053696 | 4002242 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Mid domain of argonaute | 8053697 | 3002210 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ribonuclease H-like | 8053698 | 3000143 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Piwi_N_1 | e2yhbA6 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: Piwi_N_1 | ECOD (1.6) |
A | Piwi_C | e2yhbA5 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Piwi_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
A | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02171 | Piwi domain (Piwi) | Piwi domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
POST-TRANSCRIPTIONAL GENE SILENCING PROTEIN QDE-2 | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036397 | Ribonuclease H superfamily | Homologous Superfamily | |
IPR045246 | Argonaute-like, PIWI domain | Domain | |
IPR032472 | Argonaute linker 2 domain | Domain | |
IPR036085 | PAZ domain superfamily | Homologous Superfamily | |
IPR003165 | Piwi domain | Domain | |
IPR014811 | Argonaute, linker 1 domain | Domain | |
IPR003100 | PAZ domain | Domain | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily | |
IPR032474 | Protein argonaute, N-terminal | Domain |