2YDC

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, soaked with GTP

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2ydca_	Alpha and beta proteins (a+b)	LigT-like	LigT-like	2',3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domain	automated matches	HOUSE MOUSE (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	2', 3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domain	8077321	4001421	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	LigT-like	8077322	3001408	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CNPase	e2ydcA1	A: beta barrels	X: LigT-like	H: LigT-related (From Topology)	T: LigT-related	F: CNPase	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.1740.10	Alpha Beta	Alpha-Beta Complex	2',3'-cyclic nucleotide 3'-phosphodiesterase fold	2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF05881	2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP or CNPase) (CNPase)	2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP or CNPase)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	2', 3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE	phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphoric diester hydrolase activity hydrolase activity 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity cyclic-nucleotide phosphodiesterase activity catalytic activity RNA binding binding organic cyclic compound binding nucleic acid binding nucleoside phosphate binding cyclic nucleotide binding nucleotide binding phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphoric diester hydrolase activity hydrolase activity 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity cyclic-nucleotide phosphodiesterase activity catalytic activity RNA binding binding organic cyclic compound binding nucleic acid binding nucleoside phosphate binding cyclic nucleotide binding nucleotide binding heterocyclic compound binding small molecule binding	adult locomotory behavior behavior multicellular organismal process adult behavior locomotory behavior developmental process cellular developmental process nervous system development multicellular organism development neurogenesis central nervous system development gliogenesis oligodendrocyte differentiation glial cell differentiation adult locomotory behavior behavior multicellular organismal process adult behavior locomotory behavior developmental process cellular developmental process nervous system development multicellular organism development neurogenesis central nervous system development gliogenesis oligodendrocyte differentiation glial cell differentiation cell differentiation anatomical structure development cellular process system development response to stimulus response to chemical response to toxic substance axonogenesis cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization cell projection morphogenesis neuron differentiation neuron projection morphogenesis cellular component organization or biogenesis plasma membrane bounded cell projection organization axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development head development forebrain development animal organ development brain development nucleoside phosphate metabolic process catabolic process cellular metabolic process organophosphate catabolic process primary metabolic process cyclic nucleotide catabolic process nucleoside phosphate catabolic process nucleotide metabolic process cyclic nucleotide metabolic process nucleobase-containing compound catabolic process nucleobase-containing compound metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process metabolic process small molecule metabolic process phosphorus metabolic process nucleotide catabolic process membrane organization transport biological regulation establishment of localization mitochondrial membrane organization localization organelle organization regulation of membrane permeability regulation of biological quality regulation of mitochondrial membrane permeability mitochondrial transport mitochondrion organization biological process involved in interspecies interaction between organisms response to lipid response to other organism response to oxygen-containing compound response to external stimulus response to lipopolysaccharide response to biotic stimulus response to bacterium response to external biotic stimulus response to molecule of bacterial origin	membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane cellular anatomical entity intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope mitochondrial envelope organelle cytoplasm membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane cellular anatomical entity intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope mitochondrial envelope organelle cytoplasm organelle membrane cell projection pseudopodium plasma membrane bounded cell projection myelin sheath pigment granule intracellular vesicle melanosome cytoplasmic vesicle vesicle myelin sheath abaxonal region myelin sheath adaxonal region actin-based cell projection microvillus perinuclear region of cytoplasm organelle outer membrane bounding membrane of organelle mitochondrial outer membrane outer membrane extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008431	Cyclic nucleotide phosphodiesterase	Family
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR047325	Cyclic nucleotide phosphodiesterase, catalytic domain	Domain
A	IPR009097	Cyclic phosphodiesterase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.