2Y9H | pdb_00002y9h

Structure A of CRISPR endoribonuclease Cse3 bound to 19 nt RNA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
O	d2y9ho2	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	CRISPR-associated endoribonuclease Cse3-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
O	d2y9ho1	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	automated matches	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
O	d2y9ho3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
M	d2y9hm2	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	CRISPR-associated endoribonuclease Cse3-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
M	d2y9hm1	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	automated matches	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
M	d2y9hm3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
K	d2y9hk2	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	CRISPR-associated endoribonuclease Cse3-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
K	d2y9hk1	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	automated matches	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
K	d2y9hk3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
I	d2y9hi2	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	CRISPR-associated endoribonuclease Cse3-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
I	d2y9hi1	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	automated matches	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
I	d2y9hi3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
G	d2y9hg2	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	CRISPR-associated endoribonuclease Cse3-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
G	d2y9hg1	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	automated matches	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
G	d2y9hg3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
E	d2y9he2	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	CRISPR-associated endoribonuclease Cse3-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
E	d2y9he1	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	automated matches	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
E	d2y9he3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
C	d2y9hc2	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	CRISPR-associated endoribonuclease Cse3-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
C	d2y9hc1	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	automated matches	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
A	d2y9ha2	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	CRISPR-associated endoribonuclease Cse3-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
A	d2y9ha1	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	automated matches	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
A	d2y9ha3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
O	SCOP2B Superfamily	CRISPR-associated proteins	8043608	3001554	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	CRISPR-associated proteins	8043609	3001554	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	CRISPR-associated proteins	8043609	3001554	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	CRISPR-associated proteins	8043608	3001554	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	CRISPR-associated proteins	8043609	3001554	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	CRISPR-associated proteins	8043608	3001554	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	CRISPR-associated proteins	8043609	3001554	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	CRISPR-associated proteins	8043608	3001554	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	CRISPR-associated proteins	8043609	3001554	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	CRISPR-associated proteins	8043608	3001554	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CRISPR-associated proteins	8043608	3001554	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CRISPR-associated proteins	8043609	3001554	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CRISPR-associated proteins	8043608	3001554	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CRISPR-associated proteins	8043609	3001554	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CRISPR-associated proteins	8043608	3001554	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CRISPR-associated proteins	8043609	3001554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
O	SidC_N	e2y9hO1	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F: SidC_N	ECOD (v295.2)
M	PQQ_2	e2y9hM1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: PQQ_2	ECOD (v295.2)
K	PQQ_2	e2y9hK1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: PQQ_2	ECOD (v295.2)
I	PQQ_2	e2y9hI1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: PQQ_2	ECOD (v295.2)
G	PQQ_2	e2y9hG1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: PQQ_2	ECOD (v295.2)
E	PQQ_2	e2y9hE1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: PQQ_2	ECOD (v295.2)
C	PQQ_2	e2y9hC1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: PQQ_2	ECOD (v295.2)
A	PQQ_2	e2y9hA1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: PQQ_2	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
O	3.30.70.1200	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)
O	3.30.70.1210	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)
M	3.30.70.1200	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)
M	3.30.70.1210	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)
K	3.30.70.1200	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)
K	3.30.70.1210	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)
I	3.30.70.1200	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)
I	3.30.70.1210	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)
G	3.30.70.1200	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)
G	3.30.70.1210	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)
E	3.30.70.1200	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)
E	3.30.70.1210	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)
C	3.30.70.1200	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)
C	3.30.70.1210	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)
A	3.30.70.1200	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)
A	3.30.70.1210	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G, I A, C, E, G, I, K, M, O	PF08798	CRISPR associated protein (CRISPR_assoc)	CRISPR associated protein	This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G, I A, C, E, G, I, K, M, O	IPR010179	CRISPR-associated protein Cse3	Family