2Y8Y
Structure B of CRISPR endoribonuclease Cse3 bound to 19 nt RNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2y8ya2 | Alpha and beta proteins (a+b) | Ferredoxin-like | Ferredoxin-like domains from CRISPR-associated proteins | CRISPR-associated endoribonuclease Cse3-like | automated matches | (Thermus thermophilus HB8 ) [TaxId: 300852 ], | SCOPe (2.08) |
A | d2y8ya1 | Alpha and beta proteins (a+b) | Ferredoxin-like | Ferredoxin-like domains from CRISPR-associated proteins | automated matches | automated matches | (Thermus thermophilus HB8 ) [TaxId: 300852 ], | SCOPe (2.08) |
A | d2y8ya3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Thermus thermophilus HB8 ) [TaxId: 300852 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CRISPR_assoc_C | e2y8yA1 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: CRISPR_assoc_C | ECOD (1.6) |
A | CRISPR_assoc_N | e2y8yA2 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: CRISPR_assoc_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.1200 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Crispr-associated protein | CATH (4.3.0) |
A | 3.30.70.1210 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Crispr-associated protein | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08798 | CRISPR associated protein (CRISPR_assoc) | CRISPR associated protein | This domain forms an anti-parallel beta strand structure with flanking alpha helical regions. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
CSE3 |
| - | ||
5'-R(*UP*CP*CP*CP*CP*AP*CP*GP*CP*GP*UP*GP*UP*GP *GP*GP*DGP*AP*U)-3' | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR010179 | CRISPR-associated protein Cse3 | Family |