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 2Y7K | pdb_00002y7k

DntR Inducer Binding Domain in Complex with Salicylate. Monoclinic crystal form

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd2y7kd_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like automated matches (Burkholderia sp. DNT ) [TaxId: 233098 ], SCOPe (2.08)
Cd2y7kc1 Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like automated matches (Burkholderia sp. DNT ) [TaxId: 233098 ], SCOPe (2.08)
Cd2y7kc2 Artifacts Tags Tags Tags N-terminal Tags (Burkholderia sp. DNT ) [TaxId: 233098 ], SCOPe (2.08)
Bd2y7kb1 Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like automated matches (Burkholderia sp. DNT ) [TaxId: 233098 ], SCOPe (2.08)
Bd2y7kb2 Artifacts Tags Tags Tags C-terminal Tags (Burkholderia sp. DNT ) [TaxId: 233098 ], SCOPe (2.08)
Ad2y7ka_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like automated matches (Burkholderia sp. DNT ) [TaxId: 233098 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyType 2 solute binding protein-like 8040921 3000083 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyType 2 solute binding protein-like 8040921 3000083 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyType 2 solute binding protein-like 8040921 3000083 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyType 2 solute binding protein-like 8040921 3000083 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DSBP_bac_1e2y7kD1 A: alpha arraysX: Alpha-lytic protease prodomain-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: SBP_bac_1ECOD (v295.2)
CSBP_bac_1e2y7kC1 A: alpha arraysX: Alpha-lytic protease prodomain-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: SBP_bac_1ECOD (v295.2)
BSBP_bac_1e2y7kB1 A: alpha arraysX: Alpha-lytic protease prodomain-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: SBP_bac_1ECOD (v295.2)
ASBP_bac_1e2y7kA1 A: alpha arraysX: Alpha-lytic protease prodomain-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: SBP_bac_1ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
C3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
B3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
A3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
LYSR-TYPE REGULATORY PROTEIN - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR050389HTH-type transcriptional regulator YidZ/Nodulation protein-likeFamily
A, B, C, D
IPR005119LysR, substrate-bindingDomain
A, B, C, D
IPR000847LysR, HTH, N-terminal domainDomain
A, B, C, D
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
A, B, C, D
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily